Browse Element(s) Details


OsAffx.24341.1.S1_at

Description tigr:9630.m01927
TID=OsAffx.24341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2015011/11hypothetical protein
LOC_Os12g187807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20110Os.20978.1.S1_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20110OsAffx.7789.1.S1_x_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20120Os.27066.1.A1_x_at1/112+11854049..11857200hypothetical protein
LOC_Os02g20130OsAffx.24339.1.S1_at11/112+11860593..11860978hypothetical protein
LOC_Os02g20140OsAffx.24340.1.S1_at11/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20140Os.5644.1.S1_at1/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein
LOC_Os02g20180NANA2+11888403..11889131hypothetical protein
LOC_Os02g20190OsAffx.24342.1.S1_at10/112+11895621..11896751Leucine Rich Repeat family protein
LOC_Os02g20200Os.45957.4.S1_x_at4/112+11897417..11902222retrotransposon protein, putative, unclassified
LOC_Os02g20200Os.45957.3.S1_x_at2/112+11897417..11902222retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24341.1.S1_at--612--6011Chr02:11875882..11875906 (25 bp)
GAGAGGAGGTCCCACAATCGCTGAC
LOC_Os02g20150
OsAffx.24341.1.S1_at--870--6211Chr02:11875632..11875656 (25 bp)
GAGGCGAAGTGAACCACGGGCACCC
LOC_Os02g20150
OsAffx.24341.1.S1_at--674--4091Chr02:11875512..11875536 (25 bp)
CGACGAGCGCCTTGACGCGGGCAAT
LOC_Os02g20150
OsAffx.24341.1.S1_at--750--832Chr12:10872277..10872301 (25 bp)
ATGGACTCGGGCGTGAACCAGAACG
LOC_Os12g18780
OsAffx.24341.1.S1_at--16--1453Chr12:10872296..10872320 (25 bp)
AGAACGACCTGTGCAGGAGCGGCTC
LOC_Os12g18780
OsAffx.24341.1.S1_at--668--7212Chr02:11875406..11875430 (25 bp)
GTCGATCTGCGCGAACTCGTGGTGC
LOC_Os02g20150
OsAffx.24341.1.S1_at--970--2672Chr12:10872388..10872412 (25 bp)
AAGCGACCTGCGGAGAGCGGCACAC
LOC_Os12g18780
OsAffx.24341.1.S1_at--643--4192Chr12:10872413..10872437 (25 bp)
CCCTCGCACGAGTTGACGAACTGTA
LOC_Os12g18780
OsAffx.24341.1.S1_at--555--10752Chr12:10872425..10872449 (25 bp)
TTGACGAACTGTATGGCGCCGACGC
LOC_Os12g18780
OsAffx.24341.1.S1_at--353--4094Chr12:10872444..10872468 (25 bp)
CGACGCCGTCGAACATGCAGTGGTT
LOC_Os12g18780
OsAffx.24341.1.S1_at--284--652Chr12:10872458..10872482 (25 bp)
ATGCAGTGGTTGATGGCGAGACCCA
LOC_Os12g18780
Target Sequence 
GAGAGGAGGTCCCACAATCGCTGACCGGCCACGCGGCGGCGGCGACAAGGGATAAGGGGAGGGCGGCGGCAGCGGTGCCT
ACCGGTCCCCACCGGGCTCGGACGCGGAGAGCGGCGCCCACGCTCGTGGAGCTGGGCCCGGCGTCTCCTTGCCGGAGGAG
GCGAAGTGAACCACGGGCACCCGCCCACGGCGAAGAGGAGCTTGCTCTGCCGCGCGTGCCCCATGCCCAGCGCCTCGAAC
GTCGTGGGCGCGCGCCCGCCGCCGCCGCCGTCGACCGCGACGAGCGCCTTGACGCGGGCAATGGACTCGGGCGTGAACCA
GAACGACCTGTGCAGGAGCGGCTCGGCGCCGTCCTGCGTCGGCGAGCCGCCGTTATCGCCGCCGTCGATCTGCGCGAACT
CGTGGTGCGGGAAAGCGACCTGCGGAGAGCGGCACACCCCTCGCACGAGTTGACGAACTGTATGGCGCCGACGCCGTCGA
ACATGCAGTGGTTGATGGCGAGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis