Browse Element(s) Details


OsAffx.24369.1.S2_at

Description gb:AK059254.1
DB_XREF= gi:32969272
TID=OsAffx.24369.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H06, full insert sequence.
FL= gb:AK105376.1 gb:AK058566.1 gb:AK105658.1 gb:AK059254.1 gb:AK064285.1 gb:AK106482.1 gb:AK105631.1 gb:AK109349.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5806011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58030OsAffx.26050.13.S1_x_at9/111+33887116..33887652NAD, putative, expressed
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24369.1.S2_at--217--812Chr12:8524630..8524654 (25 bp)
ATGGTATAAGCCTGCCTGACTGTGA
NONE
OsAffx.24369.1.S2_at--571--3811Chr01:33913918..33913942 (25 bp)
CTGCCTGACTGTGAGACCGACTGGT
LOC_Os01g58060
OsAffx.24369.1.S2_at--696--5653Chr12:8524900..8524924 (25 bp)
GACAGTTCGGTTCCTATCTACCGTT
NONE
OsAffx.24369.1.S2_at--214--8072Chr12:8524935..8524959 (25 bp)
GGAGAACTGCGAGGAGCCAACCCTA
NONE
OsAffx.24369.1.S2_at--879--10812Chr12:8524976..8525000 (25 bp)
TTGGGTCAACCTATGGTGTACCGGT
NONE
OsAffx.24369.1.S2_at--884--7732Chr12:8524990..8525014 (25 bp)
GGTGTACCGGTTGTTATGCCAATAG
NONE
OsAffx.24369.1.S2_at--980--10793Chr12:8525000..8525024 (25 bp)
TTGTTATGCCAATAGCAGCGCCGGG
NONE
OsAffx.24369.1.S2_at--42--3392Chr12:8525015..8525039 (25 bp)
CAGCGCCGGGCAGCTAAGTTGGTAT
NONE
OsAffx.24369.1.S2_at--736--4671Chr01:33913501..33913525 (25 bp)
GCGGGAAATCCTTCTCTATACAAGT
LOC_Os01g58060
OsAffx.24369.1.S2_at--919--10571Chr01:33913477..33913501 (25 bp)
TTCTCGTACGAGGTTTTTGAACAGA
LOC_Os01g58060
OsAffx.24369.1.S2_at--177--6153Chr12:8525136..8525160 (25 bp)
GAGGTGTGAAGCGATCTCGTACTAA
NONE
Target Sequence 
ATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTG
TGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAG
TCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAG
TGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGG
AGCCAACCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGC
TAAGTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACT
TCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24369.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis