Browse Element(s) Details


OsAffx.24369.2.S2_at

Description gb:AK109589.1
DB_XREF= gi:32994798
TID=OsAffx.24369.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B10, full insert sequence.
FL= gb:AK064513.1 gb:AK063521.1 gb:AK109589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g641901/11La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64130Os.54161.1.S1_at11/113+36178046..36179803expressed protein
LOC_Os03g64140Os.22699.1.S1_at11/113+36182043..36184058expressed protein
LOC_Os03g64150Os.56156.1.S1_at11/113+36185076..36186672MATE efflux family protein, expressed
LOC_Os03g64160OsAffx.29536.4.S1_x_at1/113+36190197..36191881hypothetical protein
LOC_Os03g64170Os.56325.1.S1_at11/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64170Os.49174.1.S1_at10/113+36195058..36198325GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g64190Os.7159.1.S1_at10/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.24369.2.S2_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64190OsAffx.32250.1.S1_x_at1/113+36204463..36210423La domain containing protein, expressed
LOC_Os03g64200Os.53058.1.S1_at11/113+36212339..36217488ABC transporter family protein, putative, expressed
LOC_Os03g64210Os.8011.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_at11/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64210Os.49147.1.S1_x_at10/113+36220340..36223788RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os03g64219Os.8776.1.S1_at11/113+36225286..36228147OTU-like cysteine protease family protein, putative, expressed
LOC_Os03g64230Os.9605.1.S1_at11/113+36230932..36233712expressed protein
LOC_Os03g64250Os.27560.1.S1_at11/113+36234180..36238381expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24369.2.S2_at--84--4353Chr12:20478741..20478765 (25 bp)
CCATGGAATCGTGCGCCGTGTGAAA
NONE
OsAffx.24369.2.S2_at--375--1271Chr12:20478769..20478793 (25 bp)
AGATCATCGCCGTTCTTAACCGAGA
NONE
OsAffx.24369.2.S2_at--198--2011Chr12:20478793..20478817 (25 bp)
ACTCAGGTTAAGCTCCGTCTCGGAA
NONE
OsAffx.24369.2.S2_at--106--6991Chr12:20478835..20478859 (25 bp)
GTAAAGCATCCCGAGGTTGGCGCAT
NONE
OsAffx.24369.2.S2_at--517--8151Chr12:20478884..20478908 (25 bp)
GGAACCCCAATATCTTTCTTCGGAG
NONE
OsAffx.24369.2.S2_at--784--8151Chr12:20479009..20479033 (25 bp)
GGAACCGTCTACCAGTTGGGAAGCT
NONE
OsAffx.24369.2.S2_at--707--6451Chr12:20479060..20479084 (25 bp)
GATAACTAAGCTGACACGCCGGAGT
NONE
OsAffx.24369.2.S2_at--747--10611Chr12:20479143..20479167 (25 bp)
TTCGTGGTGGTGCTTCAGGATTCCA
NONE
OsAffx.24369.2.S2_at--1146--6571Chr12:20479161..20479185 (25 bp)
GATTCCAATGTACTGCGTCCAAGAT
NONE
OsAffx.24369.2.S2_at--405--2811Chr12:20479181..20479205 (25 bp)
AAGATCAGAACGAGCTTGCCGGCGG
NONE
OsAffx.24369.2.S2_at--916--9151Chr12:20479211..20479235 (25 bp)
TGCCGTCCCATTCTTTAGTGAGCTG
NONE
Target Sequence 
CCATGGAATCGTGCGCCGTGTGAAACGTAGATCATCGCCGTTCTTAACCGAGACTCAGGTTAAGCTCCGTCTCGGAACCG
TCGTGGGGTTAGGAGTAAAGCATCCCGAGGTTGGCGCATCTCGTTGGGCGTGGAGAAGCATTGGGAACCCCAATATCTTT
CTTCGGAGCAGTTTCTTTTCCCGTCCCCTCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAACTGACTT
CTCCCTTCTTCATTGCTCCGGGGGAAAGGGAACCGTCTACCAGTTGGGAAGCTAGACATCAAGGTTGTGGCTTGATGAGG
ATAACTAAGCTGACACGCCGGAGTTGGCTGCTGGCACAACANGGTGGTGCCTTACCGCACCGCAGGCGCACGCGCGGTAG
CGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCGTCCAAGATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCA
TTCTTTAGTGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24369.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis