Browse Element(s) Details


OsAffx.2439.1.S1_at

Description tigr:9629.m06823
TID=OsAffx.2439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-linked GlcNAc transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6868011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68620Os.35017.1.S1_at11/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_x_at9/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68620Os.35017.2.S1_at1/111+40179469..40182897signal peptide peptidase family protein, expressed
LOC_Os01g68630Os.19016.1.S1_at11/111+40184653..40188131expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_x_at11/111+40189019..40189885expressed protein
LOC_Os01g68640OsAffx.23973.1.S1_at11/111+40189019..40189885expressed protein
LOC_Os01g68650Os.27232.1.S1_at11/111+40193187..40194309uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006493biological_processprotein amino acid O-linked glycosylation
GO:0009736biological_processcytokinin mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0016262molecular_functionprotein N-acetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2439.1.S1_at--1026--5511Chr01:40208601..40208625 (25 bp)
GAAAATCCATTGAAACTCGAAGCTC
LOC_Os01g68680
OsAffx.2439.1.S1_at--975--5531Chr01:40208590..40208614 (25 bp)
GAAACTCGAAGCTCTTACCAACAAG
LOC_Os01g68680
OsAffx.2439.1.S1_at--292--4831Chr01:40208566..40208590 (25 bp)
GCTCAAGGCTGTTAGGATGACCTGT
LOC_Os01g68680
OsAffx.2439.1.S1_at--601--6311Chr01:40208551..40208575 (25 bp)
GATGACCTGTCCTTTGTTTGATACA
LOC_Os01g68680
OsAffx.2439.1.S1_at--1034--7251Chr01:40208543..40208567 (25 bp)
GTCCTTTGTTTGATACAGCTCGATG
LOC_Os01g68680
OsAffx.2439.1.S1_at--75--331Chr01:40208453..40208555 (25 bp)
ATACAGCTCGATGGGTAAAGAATCT
LOC_Os01g68680
OsAffx.2439.1.S1_at--318--1471Chr01:40208435..40208459 (25 bp)
AGAATCTGGAGAGGGCATATTTACA
LOC_Os01g68680
OsAffx.2439.1.S1_at--717--271Chr01:40208411..40208435 (25 bp)
ATATGTGGAACCTGCATTGCTCTGG
LOC_Os01g68680
OsAffx.2439.1.S1_at--754--71Chr01:40208396..40208420 (25 bp)
ATTGCTCTGGTAGGCATCCTCAACA
LOC_Os01g68680
OsAffx.2439.1.S1_at--1071--8271Chr01:40208384..40208408 (25 bp)
GGCATCCTCAACATTTTAAGGTGCT
LOC_Os01g68680
OsAffx.2439.1.S1_at--128--3311Chr01:40208348..40208372 (25 bp)
CACAATTTCCATTTTGAGAGATAAG
LOC_Os01g68680
Target Sequence 
GAAAATCCATTGAAACTCGAAGCTCTTACCAACAAGCTCAAGGCTGTTAGGATGACCTGTCCTTTGTTTGATACAGCTCG
ATGGGTAAAGAATCTGGAGAGGGCATATTTACATATGTGGAACCTGCATTGCTCTGGTAGGCATCCTCAACATTTTAAGG
TGCTAGAAGATGATGCACAATTTCCATTTTGAGAGATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis