Browse Element(s) Details


OsAffx.24406.1.S1_at

Description tigr:9630.m02290
TID=OsAffx.24406.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24510NANA2+14197420..14202870retrotransposon protein, putative, unclassified
LOC_Os02g24520NANA2+14205074..14206909Zinc knuckle family protein
LOC_Os02g24530NANA2+14208514..14209581retrotransposon protein, putative, unclassified
LOC_Os02g24540OsAffx.17756.3.S1_at4/112+14214195..14214622hypothetical protein
LOC_Os02g24540OsAffx.17756.1.S1_x_at1/112+14214195..14214622hypothetical protein
LOC_Os02g24550Os.46874.2.S1_at5/112+14218708..14223921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24560OsAffx.24406.1.S1_at11/112+14225581..14228700hypothetical protein
LOC_Os02g24570OsAffx.278.1.S1_at2/112+14230232..14233344retrotransposon protein, putative, unclassified
LOC_Os02g24580OsAffx.24407.2.S1_s_at11/112+14235337..14235816NAD, putative
LOC_Os02g24590OsAffx.24407.2.S1_s_at11/112+14242909..14244224NADH dehydrogenase 2-like ORF 180, putative
LOC_Os02g24600Os.29056.1.S1_s_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.29056.1.S2_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32261.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32263.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32260.1.S1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32262.1.A1_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600Os.26535.1.S1_x_at11/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.32259.1.S1_x_at10/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed
LOC_Os02g24600OsAffx.26050.13.S1_x_at4/112+14252355..14258274NADH ubiquinone oxidoreductase, 20 Kd subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24406.1.S1_at--252--9991Chr02:14228028..14228052 (25 bp)
TAGCGTCGAGAACAAGTCCCTCACG
LOC_Os02g24560
OsAffx.24406.1.S1_at--170--1591Chr02:14228120..14228144 (25 bp)
AGCTCGCTGCGGCTTTGGAAAAGAT
LOC_Os02g24560
OsAffx.24406.1.S1_at--660--8971Chr02:14228154..14228178 (25 bp)
TGAAACACAGCTTGTCTCAGCCGAA
LOC_Os02g24560
OsAffx.24406.1.S1_at--369--5411Chr02:14228176..14228200 (25 bp)
GAAGCTGCTACCAAGGCTTGGGCGC
LOC_Os02g24560
OsAffx.24406.1.S1_at--93--4891Chr02:14228403..14228427 (25 bp)
GCTTAGCCTCCTTCACGAACATGGT
LOC_Os02g24560
OsAffx.24406.1.S1_at--696--991Chr02:14228441..14228465 (25 bp)
AGGATTTTCCTCAGATCGTAAAGAA
LOC_Os02g24560
OsAffx.24406.1.S1_at--1036--2871Chr02:14228464..14228488 (25 bp)
AAGGGCTGGCCCGAAAATGACCAAT
LOC_Os02g24560
OsAffx.24406.1.S1_at--628--5511Chr02:14228476..14228500 (25 bp)
GAAAATGACCAATCTGCCGCGTCGG
LOC_Os02g24560
OsAffx.24406.1.S1_at--526--7151Chr02:14228496..14228520 (25 bp)
GTCGGCCGTGAAGACCTTTCGGAAG
LOC_Os02g24560
OsAffx.24406.1.S1_at--401--2911Chr02:14228542..14228566 (25 bp)
AAGGATGGCGCGAAGACCCAGCTCC
LOC_Os02g24560
OsAffx.24406.1.S1_at--2--6331Chr02:14228614..14228638 (25 bp)
GATGCTAGTGAAGATCCCGAGCCGT
LOC_Os02g24560
Target Sequence 
TAGCGTCGAGAACAAGTCCCTCACGGGGGAAAACAAGTCTCTCCGCGTCGACCTGGACGGAGCGAACAAGAGGGCCGCCG
AACGGGAGCGCCAGCTCGCTGCGGCTTTGGAAAAGATTAAATCCCTTGAAACACAGCTTGTCTCAGCCGAAGCTGCTACC
AAGGCTTGGGCGCCGCCGGCGACGGAGTCAGCCAAGCAAGCCTGCTACACCCTTAGGCTGGCTCTCAACGACCTTGTTGT
CGAAGTGGCTGGCACGTACGGCGATTGCTGTGCGCGAGTTGCCGCAGGCTTCGTGCTTAGCCTCCTTCACGAACATGGTT
GTGACCATGTTGAGGATTTTCCTCAGATCGTAAAGAAGGGCTGGCCCGAAAATGACCAATCTGCCGCGTCGGCCGTGAAG
ACCTTTCGGAAGAGCTTCTGGGAGAATGGCGGCAAGGATGGCGCGAAGACCCAGCTCCGCGACCAGCTGGAGAGGATAGC
GAGGGCCGAAGACGCCGCTGCCGCCGATGCTAGTGAAGATCCCGAGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis