Browse Element(s) Details


OsAffx.24458.2.S1_at

Description tigr:9630.m02617
TID=OsAffx.24458.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=resistance protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2754011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27510OsAffx.22940.2.S1_s_at11/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.22940.1.S1_s_at10/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.22940.5.S1_at9/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.22940.2.S1_at9/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.22940.3.S1_x_at8/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.22940.5.S1_x_at7/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27510OsAffx.31552.2.S1_at1/112+16276799..16281075transposon protein, putative, Mutator sub-class
LOC_Os02g27520Os.14919.1.S1_at4/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27520Os.56216.1.S1_at2/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27520OsAffx.29313.1.S1_at1/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27530NANA2+16291477..16294253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27540OsAffx.24458.2.S1_at11/112+16306055..16309173NB-ARC domain containing protein
LOC_Os02g27550OsAffx.12228.1.S1_at11/112+16314214..16314507hypothetical protein
LOC_Os02g27560OsAffx.24459.1.S1_at11/112+16315482..16316631hypothetical protein
LOC_Os02g27570OsAffx.29412.1.S1_at1/112+16318446..16323865retrotransposon protein, putative, unclassified
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24458.2.S1_at--93--4991Chr02:16306592..16306616 (25 bp)
GCATGAGGCAATTGATGATCTAGAA
LOC_Os02g27540
OsAffx.24458.2.S1_at--372--5591Chr02:16306570..16306594 (25 bp)
GAAATGCCAGATTTTGTAGCCAAAT
LOC_Os02g27540
OsAffx.24458.2.S1_at--199--231Chr02:16306456..16306480 (25 bp)
ATATACCACGAATATTGCAAGGTCA
LOC_Os02g27540
OsAffx.24458.2.S1_at--71--211Chr02:16306445..16306469 (25 bp)
ATATTGCAAGGTCAAGTTTCCTAGT
LOC_Os02g27540
OsAffx.24458.2.S1_at--389--7831Chr02:16306436..16306460 (25 bp)
GGTCAAGTTTCCTAGTATTCTACAT
LOC_Os02g27540
OsAffx.24458.2.S1_at--460--3711Chr02:16306425..16306449 (25 bp)
CTAGTATTCTACATGGACTTGACAT
LOC_Os02g27540
OsAffx.24458.2.S1_at--1054--6651Chr02:16306393..16306417 (25 bp)
GTTGAAGCTCCTGAAGGGATCGACC
LOC_Os02g27540
OsAffx.24458.2.S1_at--783--9251Chr02:16306385..16306409 (25 bp)
TCCTGAAGGGATCGACCAACTGAAT
LOC_Os02g27540
OsAffx.24458.2.S1_at--516--8771Chr02:16306340..16306364 (25 bp)
TGTTAATGTTGCAGCCGAGAAAGCC
LOC_Os02g27540
OsAffx.24458.2.S1_at--161--6671Chr02:16306333..16306357 (25 bp)
GTTGCAGCCGAGAAAGCCATATTAC
LOC_Os02g27540
OsAffx.24458.2.S1_at--1016--5551Chr02:16306322..16306346 (25 bp)
GAAAGCCATATTACATGATCTTGAA
LOC_Os02g27540
Target Sequence 
GCATGAGGCAATTGATGATCTAGAAATGCCAGATTTTGTAGCCAAATCAGTTCAACTTGGCACGACGGCATTGGACATGA
CAGCAGCTTATTGCAGAAAAAAAATGCAAAATACTGACAATGTAAAGATGCGTGACATATACCACGAATATTGCAAGGTC
AAGTTTCCTAGTATTCTACATGGACTTGACATGTATGGTGTTGAAGCTCCTGAAGGGATCGACCAACTGAATGACCTGCA
CACACTTGGTGTTGTTAATGTTGCAGCCGAGAAAGCCATATTACATGATCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24458.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis