Browse Element(s) Details


OsAffx.24504.1.S1_at

Description tigr:9630.m02865
TID=OsAffx.24504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2997011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29890Os.16031.1.S1_at11/112+17775171..17779646expressed protein
LOC_Os02g29900OsAffx.12283.1.S1_at11/112+17783307..17783663hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_x_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29920OsAffx.18122.1.S1_x_at1/112+17786702..17788467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.10827.1.S1_x_at6/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.46055.2.S1_x_at5/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29940NANA2+17790935..17791576hypothetical protein
LOC_Os02g29950OsAffx.25936.7.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.2.S1_x_at8/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.5.S1_x_at4/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_at1/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29960Os.18238.1.S1_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29960OsAffx.24503.1.S1_x_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29970OsAffx.24504.1.S1_at11/112+17804198..17804632hypothetical protein
LOC_Os02g29980NANA2+17807578..17807922glucan endo-1,3-beta-glucosidase 1 precursor, putative
LOC_Os02g29990NANA2+17816988..17817950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30000OsAffx.31869.1.S1_at9/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.5.S1_x_at6/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_x_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.2.S1_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.3.S1_s_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_at2/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010OsAffx.20733.1.A1_x_at1/112+17823875..17826522transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24504.1.S1_at--736--4591Chr02:17804565..17804589 (25 bp)
GCGAGGGATCCCAGCTAGACGCCGT
LOC_Os02g29970
OsAffx.24504.1.S1_at--178--1071Chr02:17804562..17804586 (25 bp)
AGGGATCCCAGCTAGACGCCGTCGC
LOC_Os02g29970
OsAffx.24504.1.S1_at--701--4471Chr02:17804539..17804563 (25 bp)
GCCGGATCTAGACGGTGCGTCGGTG
LOC_Os02g29970
OsAffx.24504.1.S1_at--320--9111Chr02:17804465..17804489 (25 bp)
TGCTGCGGCGTCTGGCGACTTGCGA
LOC_Os02g29970
OsAffx.24504.1.S1_at--557--8451Chr02:17804453..17804477 (25 bp)
TGGCGACTTGCGAGGCGGCCGGATC
LOC_Os02g29970
OsAffx.24504.1.S1_at--376--7971Chr02:17804433..17804457 (25 bp)
GGATCGTCGCGCAAGTCTGCTCACG
LOC_Os02g29970
OsAffx.24504.1.S1_at--420--2851Chr02:17804421..17804445 (25 bp)
AAGTCTGCTCACGAGGTGGCGGTCA
LOC_Os02g29970
OsAffx.24504.1.S1_at--387--9091Chr02:17804416..17804440 (25 bp)
TGCTCACGAGGTGGCGGTCATGCTC
LOC_Os02g29970
OsAffx.24504.1.S1_at--809--1651Chr02:17804340..17804364 (25 bp)
AGCGCGGCATCAGTCGGCTCCGGGT
LOC_Os02g29970
OsAffx.24504.1.S1_at--414--7911Chr02:17804318..17804342 (25 bp)
GGTTGGCGAGTTTGGCGTCCGGCCA
LOC_Os02g29970
OsAffx.24504.1.S1_at--654--8231Chr02:17804279..17804303 (25 bp)
GGCAACTGCGGAAGCCGTCCCTGCA
LOC_Os02g29970
Target Sequence 
GCGAGGGATCCCAGCTAGACGCCGTCGCCGGATCTAGACGGTGCGTCGGTGGCGGTGTCGTGGGGCGGCGTGAAGCGGAG
GTGGCCCGGCTGGCGGCGGCTGCTGCGGCGTCTGGCGACTTGCGAGGCGGCCGGATCGTCGCGCAAGTCTGCTCACGAGG
TGGCGGTCATGCTCGGCCGTGCGGGCGCCGGAGCGTGGGCGGCGGATTGCCAGTGCCCGCGTGGCAGCGCGGCATCAGTC
GGCTCCGGGTTGGCGAGTTTGGCGTCCGGCCACCCCCCCTGTCGCTGGCAACTGCGGAAGCCGTCCCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis