Browse Element(s) Details


OsAffx.24531.1.S1_at

Description tigr:9630.m03046
TID=OsAffx.24531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3219011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32160Os.8647.1.S1_at11/112+18988145..18995211Copine family protein, expressed
LOC_Os02g32170OsAffx.30613.3.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.3.S1_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32170OsAffx.30613.1.S1_x_at11/112+18996130..18998481hAT family dimerisation domain containing protein
LOC_Os02g32180OsAffx.12316.1.S1_at10/112+19002248..19006431hypothetical protein
LOC_Os02g32190OsAffx.24531.1.S1_at11/112+19010914..19014434hypothetical protein
LOC_Os02g32200Os.18269.1.S2_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32200Os.18269.1.S1_at11/112+19015774..19018851thioesterase family protein, putative, expressed
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24531.1.S1_at--344--8851Chr02:19013331..19013355 (25 bp)
TGATCATCGTCAATGGGCCTCTGGA
LOC_Os02g32190
OsAffx.24531.1.S1_at--181--7751Chr02:19013723..19013837 (25 bp)
GGTGTAGCATCAGCTGACAGCCGTA
LOC_Os02g32190
OsAffx.24531.1.S1_at--249--2151Chr02:19013830..19013853 (24 bp)
ACAGCCGTAGGCAGAAACTTCTCGA
LOC_Os02g32190
OsAffx.24531.1.S1_at--47--8011Chr02:19013878..19013977 (25 bp)
GGATGGCATTTTGGCTTTCCTCAAA
LOC_Os02g32190
OsAffx.24531.1.S1_at--645--1571Chr02:19013986..19014010 (25 bp)
AGCTAACTGGATATGCTCGCACAGA
LOC_Os02g32190
OsAffx.24531.1.S1_at--748--591Chr02:19014018..19014042 (25 bp)
ATGAACCGAACATAGCTGGGCTTGG
LOC_Os02g32190
OsAffx.24531.1.S1_at--1--7311Chr02:19014164..19014188 (25 bp)
GTGCGAAATCTATCTTCTTCAGCCT
LOC_Os02g32190
OsAffx.24531.1.S1_at--1025--1671Chr02:19014184..19014208 (25 bp)
AGCCTCGTGAGCAAACTGACCATAT
LOC_Os02g32190
OsAffx.24531.1.S1_at--388--231Chr02:19014205..19014229 (25 bp)
ATATTCAGATGACGGCCGTGGCAGC
LOC_Os02g32190
OsAffx.24531.1.S1_at--320--6511Chr02:19014282..19014306 (25 bp)
GATATCTACACTGCCGATGGCGTTA
LOC_Os02g32190
OsAffx.24531.1.S1_at--153--6231Chr02:19014297..19014321 (25 bp)
GATGGCGTTAACATTCCTCGCGTCA
LOC_Os02g32190
Target Sequence 
TGATCATCGTCAATGGGCCTCTGGATTTTCTCAGAGCCACAAAGTATTTGAGAAGCTGATACAGAACGTGATGAGATGGA
AGAGGAGACAGAAGGGTGTAGCATCAGCTGACAGCCGTAGGCAGAAACTTCTCGAGTTCTTCAGCAGTTACAGCAAGTCG
GATGGCATTTTGGCTTTCCTCAAATATGCAGCAGCTAACTGGATATGCTCGCACAGAGAGGAGTATGAACCGAACATAGC
TGGGCTTGGAGGTGGCTACACCCTGGAAGCTTGGTGCGAAATCTATCTTCTTCAGCCTCGTGAGCAAACTGACCATATTC
AGATGACGGCCGTGGCAGCCGCGCTTGGGGTGCCTCTCCGAGTGGAGAACCTGCATAATGGACCAGCTCAAGATATCTAC
ACTGCCGATGGCGTTAACATTCCTCGCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis