Browse Element(s) Details


OsAffx.24538.1.S1_at

Description tigr:9630.m03070
TID=OsAffx.24538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3241011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32390OsAffx.29532.2.S1_x_at11/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_at10/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.1.S1_x_at4/112+19136481..19138368hypothetical protein
LOC_Os02g32400OsAffx.24537.1.S1_at10/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32400Os.9470.1.S1_at1/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein
LOC_Os02g32430Os.10953.1.A1_at11/112+19171915..19173974WD40 repeat protein, putative, expressed
LOC_Os02g32440NANA2+19174366..19175550expressed protein
LOC_Os02g32450Os.51245.1.S1_at11/112+19180457..19181216expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24538.1.S1_at--690--7631Chr02:19157196..19157220 (25 bp)
GGGACGCTTTGTGCTGTTATATGTG
LOC_Os02g32410
OsAffx.24538.1.S1_at--511--8071Chr02:19157363..19157387 (25 bp)
GGAGCACAGGGAACCATACGCGAAA
LOC_Os02g32410
OsAffx.24538.1.S1_at--926--315Chr09:15695549..15695569 (21 bp)
ATACGCGAAAGCCTTGCCATGCCTT
NONE
OsAffx.24538.1.S1_at--722--591Chr02:19157396..19157420 (25 bp)
ATGCCTTCTGGCTCTGGCAACGCCT
LOC_Os02g32410
OsAffx.24538.1.S1_at--122--4511Chr02:19157426..19157450 (25 bp)
GCCGTTTCCATTCTCGGAGGCATTG
LOC_Os02g32410
OsAffx.24538.1.S1_at--459--8271Chr02:19157444..19157468 (25 bp)
GGCATTGTTAAGACGTGTTCCCTCT
LOC_Os02g32410
OsAffx.24538.1.S1_at--161--8811Chr02:19157459..19157483 (25 bp)
TGTTCCCTCTTCTTCCATCATTGTG
LOC_Os02g32410
OsAffx.24538.1.S1_at--675--10671Chr02:19157471..19157495 (25 bp)
TTCCATCATTGTGCTCCAGGTGAAA
LOC_Os02g32410
OsAffx.24538.1.S1_at--627--9211Chr02:19157485..19157509 (25 bp)
TCCAGGTGAAAGTCTTGCCCCGGTT
LOC_Os02g32410
OsAffx.24538.1.S1_at--310--1631Chr02:19157518..19157542 (25 bp)
AGCGGCAGCGGCGATTCACATCTCG
LOC_Os02g32410
OsAffx.24538.1.S1_at--101--4051Chr02:19157529..19157553 (25 bp)
CGATTCACATCTCGTCCCTATTGGG
LOC_Os02g32410
Target Sequence 
GGGACGCTTTGTGCTGTTATATGTGGTGGAGGTTGTTCGTTGGTTGCGGCCGTCGGTGAGGTCGTGCCCATGGGGAGCTC
CGGGGTGCTTGGTCGCCGGAGGTCGGAGCACAGGGAACCATACGCGAAAGCCTTGCCATGCCTTCTGGCTCTGGCAACGC
CTTCGGCGCCGTTTCCATTCTCGGAGGCATTGTTAAGACGTGTTCCCTCTTCTTCCATCATTGTGCTCCAGGTGAAAGTC
TTGCCCCGGTTAATGGGCAAGCGGCAGCGGCGATTCACATCTCGTCCCTATTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis