Browse Element(s) Details


OsAffx.24551.1.S1_at

Description tigr:9630.m03144
TID=OsAffx.24551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein phosphatase 2C, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3312011/11protein phosphatase 2C, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33110Os.9416.1.S1_at10/112+19676675..19681381Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24551.1.S1_at--622--8991Chr02:19697997..19698021 (25 bp)
TGAAGGGCAAGATGCCCCTCGGCAT
LOC_Os02g33120
OsAffx.24551.1.S1_at--563--8011Chr02:19697972..19697996 (25 bp)
GGAGGACAGCCACATCGCAGAGTTC
LOC_Os02g33120
OsAffx.24551.1.S1_at--841--1231Chr02:19697952..19697976 (25 bp)
AGTTCCATCGCCTGGAGGACGGCAA
LOC_Os02g33120
OsAffx.24551.1.S1_at--836--1931Chr02:19697934..19697958 (25 bp)
ACGGCAATGAGGTTGGCCTCTTCGT
LOC_Os02g33120
OsAffx.24551.1.S1_at--230--4591Chr02:19697841..19697865 (25 bp)
GCGAACAGGGCTTCGGGACCGATAC
LOC_Os02g33120
OsAffx.24551.1.S1_at--732--9411Chr02:19697829..19697853 (25 bp)
TCGGGACCGATACCATGGACGCCAT
LOC_Os02g33120
OsAffx.24551.1.S1_at--576--4451Chr02:19697797..19697821 (25 bp)
GCCTACCACCGCACAGACTGGAAGG
LOC_Os02g33120
OsAffx.24551.1.S1_at--288--1951Chr02:19697781..19697805 (25 bp)
ACTGGAAGGTGCTAAGGACGACGAC
LOC_Os02g33120
OsAffx.24551.1.S1_at--306--8411Chr02:19697727..19697751 (25 bp)
GGCGCCACAGCGGATCGACAGTTGC
LOC_Os02g33120
OsAffx.24551.1.S1_at--553--6391Chr02:19697715..19697739 (25 bp)
GATCGACAGTTGCTCGTGGACCAAG
LOC_Os02g33120
OsAffx.24551.1.S1_at--453--3831Chr02:19697660..19697684 (25 bp)
CTGCGGATTCGTGACGGAGATGCAT
LOC_Os02g33120
Target Sequence 
TGAAGGGCAAGATGCCCCTCGGCATGGAGGACAGCCACATCGCAGAGTTCCATCGCCTGGAGGACGGCAATGAGGTTGGC
CTCTTCGTCGTGTTCAACGGCCTCTCCGACGCCGACGTCGCCACCTACCTCGGCGAGCACCTTTCCACCCTCCTCCGCGA
ACAGGGCTTCGGGACCGATACCATGGACGCCATCCGCCGCGCCTACCACCGCACAGACTGGAAGGTGCTAAGGACGACGA
CGGAGGAGGGTGACAGCGAGGAGCGGAGCGGGCGCCACAGCGGATCGACAGTTGCTCGTGGACCAAGAGCCGCTCCAGGA
GCACGGCGCGAGCGCCGCTGCGGATTCGTGACGGAGATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis