Browse Element(s) Details


OsAffx.24552.1.S1_at

Description tigr:9630.m03145
TID=OsAffx.24552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=invertase inhibitor precursor (pollen allergen pla a 1). (london plane tree, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3313011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33110Os.9416.1.S1_at10/112+19676675..19681381Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24552.1.S1_at--176--571Chr02:19703258..19703282 (25 bp)
ATCCTTACGTTGAGTGGCGCCGCAC
LOC_Os02g33130
OsAffx.24552.1.S1_at--498--3211Chr02:19703222..19703246 (25 bp)
CAAGGAACATGCAAGGCCGCGGCCG
LOC_Os02g33130
OsAffx.24552.1.S1_at--901--4511Chr02:19703188..19703212 (25 bp)
GCCGCATCAGCTACAAGTTCTGTGT
LOC_Os02g33130
OsAffx.24552.1.S1_at--371--1231Chr02:19703173..19703197 (25 bp)
AGTTCTGTGTGTCCAAGCTGAGCAA
LOC_Os02g33130
OsAffx.24552.1.S1_at--662--531Chr02:19703105..19703129 (25 bp)
ATCGCGGCTAGTTTGGGCATCTCCA
LOC_Os02g33130
OsAffx.24552.1.S1_at--635--7811Chr02:19703067..19703091 (25 bp)
GGTCTTCGACATCAAGGGACTTGTA
LOC_Os02g33130
OsAffx.24552.1.S1_at--882--10691Chr02:19703005..19703029 (25 bp)
TTGCGCGGTGCCAGGAGCTGTACAA
LOC_Os02g33130
OsAffx.24552.1.S1_at--802--2591Chr02:19702982..19703006 (25 bp)
AACGAGATGTCCTTTGTGTTCGCCG
LOC_Os02g33130
OsAffx.24552.1.S1_at--906--7411Chr02:19702967..19702991 (25 bp)
GTGTTCGCCGAAGGATACGACTGTA
LOC_Os02g33130
OsAffx.24552.1.S1_at--604--1851Chr02:19702951..19702975 (25 bp)
ACGACTGTATCAACGCGCAAAGCTA
LOC_Os02g33130
OsAffx.24552.1.S1_at--996--7771Chr02:19702822..19702846 (25 bp)
GGTGCTCCGTGCAGATGTCGATCAT
LOC_Os02g33130
Target Sequence 
ATCCTTACGTTGAGTGGCGCCGCACACGCGGACGTGCAAGGAACATGCAAGGCCGCGGCCGGCATCGACAGCCGCATCAG
CTACAAGTTCTGTGTGTCCAAGCTGAGCAACCACCACCTCAGCCCAGACGCGGACACACGGGGCCTAGCCTTGATCGCGG
CTAGTTTGGGCATCTCCAACGCGGAAGACACGGTCTTCGACATCAAGGGACTTGTAGCCAAGCCAGGCACCGGTGCCAAG
GCGAAGCCGTTGCTTGCGCGGTGCCAGGAGCTGTACAACGAGATGTCCTTTGTGTTCGCCGAAGGATACGACTGTATCAA
CGCGCAAAGCTACGCTGCGGGGAAGGAGAAGGTGGGAGAGGCCATCCCCCTCGCGCGCCAGTGCGACGATGCCTTCGCCA
AGGCCGCCGTCCCGTCGCCGCTGGTGCAGCGTAGCTGGTGCTCCGTGCAGATGTCGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis