Browse Element(s) Details


OsAffx.24574.1.S1_at

Description gb:AK063102.1
DB_XREF= gi:32973120
TID=OsAffx.24574.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C10, full insert sequence.
FL= gb:AK063102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34600Os.11782.1.S1_at11/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34600Os.54455.1.S1_at1/112+20740496..20745452Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g34610NANA2+20747040..20747552expressed protein
LOC_Os02g34620NANA2+20752385..20753121hypothetical protein
LOC_Os02g34630Os.14985.1.S1_at11/112+20757531..20761714Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g34640OsAffx.24574.1.S1_at11/112+20770379..20771216expressed protein
LOC_Os02g34650Os.27459.1.A1_at11/112+20776225..20780085expressed protein
LOC_Os02g34650OsAffx.24575.1.S1_x_at11/112+20776225..20780085expressed protein
LOC_Os02g34660OsAffx.5954.1.S1_x_at5/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34660OsAffx.5954.3.S1_x_at3/112+20785698..20788668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g34670OsAffx.5954.5.S1_x_at2/112+20789559..20791046retrotransposon protein, putative, unclassified
LOC_Os02g34680Os.11873.1.S1_at11/112+20795098..20798535Transcription repressor TRM protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24574.1.S1_at--227--9331Chr02:20770944..20770968 (25 bp)
TCGCCGAGTGGCTCTCCGTGCTCAG
LOC_Os02g34640
OsAffx.24574.1.S1_at--755--1091Chr02:20770950..20770974 (25 bp)
AGTGGCTCTCCGTGCTCAGCCTCTA
LOC_Os02g34640
OsAffx.24574.1.S1_at--1134--691Chr02:20771044..20771068 (25 bp)
ATGAGAGCTCGCGCGCGTGCCATCT
LOC_Os02g34640
OsAffx.24574.1.S1_at--682--9511Chr02:20771068..20771092 (25 bp)
TCTCTCTACTACTCGTGTACGTTTT
LOC_Os02g34640
OsAffx.24574.1.S1_at--854--9891Chr02:20771077..20771101 (25 bp)
TACTCGTGTACGTTTTACTATTATT
LOC_Os02g34640
OsAffx.24574.1.S1_at--187--171Chr02:20771115..20771139 (25 bp)
ATTATTGTGGGTTTGGATTTGTGTT
LOC_Os02g34640
OsAffx.24574.1.S1_at--297--6851Chr02:20771125..20771149 (25 bp)
GTTTGGATTTGTGTTTTGGTGTAAT
LOC_Os02g34640
OsAffx.24574.1.S1_at--1126--8591Chr02:20771141..20771165 (25 bp)
TGGTGTAATTAATCAATTCGTGTGA
LOC_Os02g34640
OsAffx.24574.1.S1_at--1075--91Chr02:20771156..20771180 (25 bp)
ATTCGTGTGATTAACTAAGATGGGA
LOC_Os02g34640
OsAffx.24574.1.S1_at--906--6251Chr02:20771174..20771198 (25 bp)
GATGGGAGTATCATACATGAACAAC
LOC_Os02g34640
OsAffx.24574.1.S1_at--314--5511Chr02:20771192..20771216 (25 bp)
GAACAACAAGATTCTTAGTTTGATT
LOC_Os02g34640
Target Sequence 
TCGCCGAGTGGCTCTCCGTGCTCAGCCTCTACCGCTCCTGCAAGCGCGTCGCCGCCTGCTTCGCCGCCAAGGCCAAGCCG
CCGCCGCCGGCGCCGGCGCCATGAGAGCTCGCGCGCGTGCCATCTCTCTCTACTACTCGTGTACGTTTTACTATTATTAG
TTTATATGATTATTATTGTGGGTTTGGATTTGTGTTTTGGTGTAATTAATCAATTCGTGTGATTAACTAAGATGGGAGTA
TCATACATGAACAACAAGATTCTTAGTTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis