Browse Element(s) Details


OsAffx.24627.1.S1_at

Description tigr:9630.m03665
TID=OsAffx.24627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3818010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38150OsAffx.5106.1.S1_at2/112+23067758..23068544hypothetical protein
LOC_Os02g38160Os.9993.1.S1_at11/112+23077237..23080571glycosyl transferase family 17 protein, putative, expressed
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24627.1.S1_at--1156--6031Chr02:23096150..23096174 (25 bp)
GAGATCGATGAGTTCTGCCACGCGC
LOC_Os02g38180
OsAffx.24627.1.S1_at--952--8371Chr02:23096081..23096105 (25 bp)
GGCGATCCACGGGAGCTCATGAACT
LOC_Os02g38180
OsAffx.24627.1.S1_at--76--4171NONE
CGCCGAGCTGCCACATAAGTTACAA
NONE
OsAffx.24627.1.S1_at--664--3391Chr02:23093550..23093574 (25 bp)
CAGCGGCACAAGCACCAATAGGTCA
LOC_Os02g38180
OsAffx.24627.1.S1_at--1102--3391Chr02:23093391..23093506 (25 bp)
CAGCATCTGCATCCTATCAGCAAGG
LOC_Os02g38180
OsAffx.24627.1.S1_at--782--971Chr02:23093369..23093393 (25 bp)
AGGAGCTCATGCTGGGCCATATTGT
LOC_Os02g38180
OsAffx.24627.1.S1_at--310--231Chr02:23093351..23093375 (25 bp)
ATATTGTGCTCCACCTTATGCATAT
LOC_Os02g38180
OsAffx.24627.1.S1_at--93--651Chr02:23093334..23093358 (25 bp)
ATGCATATGCCAACCCTATGTCTTA
LOC_Os02g38180
OsAffx.24627.1.S1_at--1024--10111Chr02:23093318..23093342 (25 bp)
TATGTCTTACCAGCAGGCTCATGGG
LOC_Os02g38180
OsAffx.24627.1.S1_at--312--5271Chr02:23093296..23093318 (23 bp)
GAATGCTGGCTAACCATCTGCAGAA
LOC_Os02g38180
OsAffx.24627.1.S1_at--635--2531Chr02:23093108..23093132 (25 bp)
AACTATCATGGCTACCAGGCAGCTT
LOC_Os02g38180
Target Sequence 
GAGATCGATGAGTTCTGCCACGCGCACGAGGCAGCCTTGGTGGATGCCGTCACCGACCTGCCGGTATGGGGCGATCCACG
GGAGCTCATGAACTCCTTGTGCAGCCCCGCCGAGCTGCCACATAAGTTACAAATAGAGCTTACTGAGAACAACTATTACA
CTTTGTTAAATGCATGTTCTAAAAATGAAATATTCCAAGATGCAATATGGCTAACAGCGGCACAAGCACCAATAGGTCAA
TCTGGGATGCCAGTGGCATCATGCCACAAGCTCAAGCTGCACCAGCATCTGCATCCTATCAGCAAGGAGCTCATGCTGGG
CCATATTGTGCTCCACCTTATGCATATGCCAACCCTATGTCTTACCAGCAGGCTCATGGGAATGCTGGCTAACCATCTGC
AGAATGTCTACTCCAACTATCATGGCTACCAGGCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis