Browse Element(s) Details


OsAffx.24666.1.S1_at

Description tigr:9630.m03930
TID=OsAffx.24666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g406649/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40590OsAffx.12431.1.S1_at11/112+24618878..24619516hypothetical protein
LOC_Os02g40600OsAffx.12432.1.S1_at11/112+24621341..24622075hypothetical protein
LOC_Os02g40610OsAffx.2929.1.S1_at10/112+24623026..24625441hypothetical protein
LOC_Os02g40620OsAffx.24664.1.S1_at11/112+24625936..24626679hypothetical protein
LOC_Os02g40630OsAffx.2930.1.S1_at11/112+24629693..24630130hypothetical protein
LOC_Os02g40640OsAffx.24665.1.S1_at11/112+24635414..24636112hypothetical protein
LOC_Os02g40650OsAffx.2931.1.S1_at11/112+24637524..24638189hypothetical protein
LOC_Os02g40664Os.18434.1.S1_at11/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40664OsAffx.24666.1.S1_at9/112+24639637..24645322zinc finger family protein, putative, expressed
LOC_Os02g40680Os.51164.1.S1_at11/112+24661382..24664923Mis12 protein, expressed
LOC_Os02g40690NANA2+24665535..24665747hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24666.1.S1_at--290--1711NONE
ACCAAGTCCGCCAAGATTAGTGGAG
NONE
OsAffx.24666.1.S1_at--496--7251NONE
GTCCGCCAAGATTAGTGGAGATATC
NONE
OsAffx.24666.1.S1_at--2--7531Chr02:24642463..24642487 (25 bp)
GTGGAGATATCTATGCAGATCTTGG
LOC_Os02g40664
OsAffx.24666.1.S1_at--164--9551Chr02:24642454..24642478 (25 bp)
TCTATGCAGATCTTGGAGTTGATTC
LOC_Os02g40664
OsAffx.24666.1.S1_at--833--5031Chr02:24642449..24642473 (25 bp)
GCAGATCTTGGAGTTGATTCAGAAT
LOC_Os02g40664
OsAffx.24666.1.S1_at--1153--6551Chr02:24642434..24642458 (25 bp)
GATTCAGAATTTGAGATCGGCTTCT
LOC_Os02g40664
OsAffx.24666.1.S1_at--713--1471Chr02:24642429..24642453 (25 bp)
AGAATTTGAGATCGGCTTCTGTCAT
LOC_Os02g40664
OsAffx.24666.1.S1_at--1115--10751Chr02:24642424..24642448 (25 bp)
TTGAGATCGGCTTCTGTCATAGTAT
LOC_Os02g40664
OsAffx.24666.1.S1_at--726--6391Chr02:24642420..24642444 (25 bp)
GATCGGCTTCTGTCATAGTATGGCA
LOC_Os02g40664
OsAffx.24666.1.S1_at--572--8291Chr02:24642416..24642440 (25 bp)
GGCTTCTGTCATAGTATGGCAAACT
LOC_Os02g40664
OsAffx.24666.1.S1_at--1114--10031Chr02:24642405..24642429 (25 bp)
TAGTATGGCAAACTCTAGGCAGGGC
LOC_Os02g40664
Target Sequence 
ACCAAGTCCGCCAAGATTAGTGGAGATATCTATGCAGATCTTGGAGTTGATTCAGAATTTGAGATCGGCTTCTGTCATAG
TATGGCAAACTCTAGGCAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis