Browse Element(s) Details


OsAffx.24706.1.S1_at

Description tigr:9630.m04195
TID=OsAffx.24706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4358011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os02g43600Os.34081.1.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43600Os.7743.2.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24706.1.S1_at--444--9071Chr02:26287500..26287524 (25 bp)
TGCTTCGTGCTTGGGGAACCTCTGT
LOC_Os02g43580
OsAffx.24706.1.S1_at--1004--7551Chr02:26287470..26287494 (25 bp)
GGGCCTGCTCTTCGCATGCGTCCTG
LOC_Os02g43580
OsAffx.24706.1.S1_at--820--9571Chr02:26287462..26287486 (25 bp)
TCTTCGCATGCGTCCTGAGCACGGG
LOC_Os02g43580
OsAffx.24706.1.S1_at--1062--7651Chr02:26287440..26287464 (25 bp)
GGGGCGCAACTAGCCAAACCATGGG
LOC_Os02g43580
OsAffx.24706.1.S1_at--1108--1031Chr02:26287411..26287435 (25 bp)
AGGTCCTTGGCTCCACTCGCGGTTG
LOC_Os02g43580
OsAffx.24706.1.S1_at--969--3811Chr02:26287401..26287425 (25 bp)
CTCCACTCGCGGTTGATACTGTTGA
LOC_Os02g43580
OsAffx.24706.1.S1_at--520--9911Chr02:26287385..26287409 (25 bp)
TACTGTTGAGCGATCTTGGAGGCCC
LOC_Os02g43580
OsAffx.24706.1.S1_at--828--10751Chr02:26287380..26287404 (25 bp)
TTGAGCGATCTTGGAGGCCCTTGGT
LOC_Os02g43580
OsAffx.24706.1.S1_at--978--411Chr02:26287373..26287397 (25 bp)
ATCTTGGAGGCCCTTGGTGCCCTGA
LOC_Os02g43580
OsAffx.24706.1.S1_at--987--8551Chr02:26287369..26287393 (25 bp)
TGGAGGCCCTTGGTGCCCTGAGCAA
LOC_Os02g43580
OsAffx.24706.1.S1_at--855--3611Chr02:26287361..26287385 (25 bp)
CTTGGTGCCCTGAGCAACTGGAGGT
LOC_Os02g43580
Target Sequence 
TGCTTCGTGCTTGGGGAACCTCTGTGTTCGGGGCCTGCTCTTCGCATGCGTCCTGAGCACGGGGCGCAACTAGCCAAACC
ATGGGGGCCAGGTCCTTGGCTCCACTCGCGGTTGATACTGTTGAGCGATCTTGGAGGCCCTTGGTGCCCTGAGCAACTGG
AGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis