Browse Element(s) Details


OsAffx.24712.2.S1_at

Description tigr:9639.m03227
TID=OsAffx.24712.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g358308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein
LOC_Os11g35850OsAffx.31316.1.S1_at11/1111+20539557..20542742Leucine Rich Repeat family protein, expressed
LOC_Os11g35860OsAffx.19181.1.S1_at11/1111+20545167..20547167Protein kinase domain containing protein
LOC_Os11g35870Os.10476.1.S1_at11/1111+20549679..20554880RWD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24712.2.S1_at--902--5131Chr11:20525843..20525862 (20 bp)
GCAACGACGGGTTCAAGCGTGGACC
LOC_Os11g35830
OsAffx.24712.2.S1_at--108--3251Chr11:20525731..20525861 (25 bp)
CAACGACGGGTTCAAGCGTGGACCG
LOC_Os11g35830
OsAffx.24712.2.S1_at--543--1851Chr11:20525729..20525859 (25 bp)
ACGACGGGTTCAAGCGTGGACCGCA
LOC_Os11g35830
OsAffx.24712.2.S1_at--895--4091Chr11:20525728..20525858 (25 bp)
CGACGGGTTCAAGCGTGGACCGCAC
LOC_Os11g35830
OsAffx.24712.2.S1_at--591--5751Chr11:20525727..20525857 (25 bp)
GACGGGTTCAAGCGTGGACCGCACA
LOC_Os11g35830
OsAffx.24712.2.S1_at--586--1911Chr11:20525726..20525856 (25 bp)
ACGGGTTCAAGCGTGGACCGCACAG
LOC_Os11g35830
OsAffx.24712.2.S1_at--607--3971Chr11:20525725..20525855 (25 bp)
CGGGTTCAAGCGTGGACCGCACAGC
LOC_Os11g35830
OsAffx.24712.2.S1_at--27--7691Chr11:20525724..20525854 (25 bp)
GGGTTCAAGCGTGGACCGCACAGCA
LOC_Os11g35830
Target Sequence 
GCAACGACGGGTTCAAGCGTGGACCGCACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24712.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis