Browse Element(s) Details


OsAffx.24779.1.S1_at

Description tigr:9630.m04700
TID=OsAffx.24779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g482201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24779.1.S1_at--524--6653Chr10:19546231..19546255 (25 bp)
GTTGATGCCTTCAGCCGCGTCGCAT
NONE
OsAffx.24779.1.S1_at--263--3393Chr10:19546242..19546266 (25 bp)
CAGCCGCGTCGCATGGATGAGAATC
NONE
OsAffx.24779.1.S1_at--270--6471Chr02:29522717..29522741 (25 bp)
GATAACCCTAGCATTCCCGTTTATA
NONE
OsAffx.24779.1.S1_at--311--4191Chr02:29522701..29522725 (25 bp)
CCGTTTATAAATTGAGGGATGCCAT
NONE
OsAffx.24779.1.S1_at--354--10191NONE
TATATCTGGTATTGCGCTTTCACTC
NONE
OsAffx.24779.1.S1_at--590--71Chr02:29522127..29522151 (25 bp)
ATTGCGCTTTCACTCTAGAATCACG
NONE
OsAffx.24779.1.S1_at--1161--5231Chr02:29522110..29522134 (25 bp)
GAATCACGCGTTTATCTCAGCAATT
NONE
OsAffx.24779.1.S1_at--269--4631Chr02:29522103..29522127 (25 bp)
GCGTTTATCTCAGCAATTTCTTCCG
NONE
OsAffx.24779.1.S1_at--85--9831Chr02:29522068..29522092 (25 bp)
TAAAATCTGGATGTGATGCTCGGCA
NONE
OsAffx.24779.1.S1_at--256--3131NONE
AATTTCTGGGCTATGCTTGCTGACG
NONE
OsAffx.24779.1.S1_at--877--10711Chr02:29519594..29519618 (25 bp)
TTGCTGACGCAGGATTTGCCGGCCA
LOC_Os02g48220
Target Sequence 
GTTGATGCCTTCAGCCGCGTCGCATGGATGAGAATCGCATCTGTGGAGGAGGAGTATCCTGCTAGGGGACGGGATAACCC
TAGCATTCCCGTTTATAAATTGAGGGATGCCATATATCTGGTATTGCGCTTTCACTCTAGAATCACGCGTTTATCTCAGC
AATTTCTTCCGTTGGACTGCATAAAATCTGGATGTGATGCTCGGCAGTATCGCGCTGTTCAGTACAGATTTGGTTGCATC
ATTTATGGTGACTTCCTAAAGAGGTTTTTAAGTTGCTCTCTTGATGTCCAGCAGGTGAAGCAAGGTAATTTCTCAAGTGA
TGCCTTGGACATAAACATGTCAAGCTGTCAACTCTTCTTAGTTGAGAGGCAGTACCTGACATTTAACTCAAGAAGAAGAG
AAGCAATTTGTATTAGAGAACTACAAAACCTGCTGAATTTCTGGGCTATGCTTGCTGACGCAGGATTTGCCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis