Browse Element(s) Details


OsAffx.24787.1.S1_at

Description tigr:9630.m04749
TID=OsAffx.24787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 9197-9913
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g486801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein
LOC_Os02g48720Os.9282.1.S1_at11/112+29816067..29819384ADP,ATP carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24787.1.S1_at--399--7451Chr02:29795528..29795773 (25 bp)
GTGTCTGTCGGAGATTACTCTTCCT
LOC_Os02g48680
OsAffx.24787.1.S1_at--848--6471Chr02:29796644..29796665 (22 bp)
GATACTTTCTTTATGAGACCTTCAA
NONE
OsAffx.24787.1.S1_at--730--4431Chr02:29796971..29796995 (25 bp)
GCCATATAGGCCTTGCAAATCCTGC
NONE
OsAffx.24787.1.S1_at--246--3131NONE
AATTTAGGTATCCTCCTTGGGCTGA
NONE
OsAffx.24787.1.S1_at--1045--8891Chr02:29797686..29797710 (25 bp)
TGAGATCAAGCCTATGCCACCATTA
NONE
OsAffx.24787.1.S1_at--412--3591Chr02:29797706..29797730 (25 bp)
CATTATCATTTTCCTCTTGCACAAG
NONE
OsAffx.24787.1.S1_at--1083--351Chr02:29797758..29797782 (25 bp)
ATAATGTTCTTGACCTTGCAAGGCC
NONE
OsAffx.24787.1.S1_at--770--9471Chr02:29797924..29797948 (25 bp)
TCTGTTTCCTTGATGAGTTGCGAGT
NONE
OsAffx.24787.1.S1_at--1001--1231Chr02:29797939..29797963 (25 bp)
AGTTGCGAGTTTGCGACATTCCTGT
NONE
OsAffx.24787.1.S1_at--179--6891Chr02:29798010..29798034 (25 bp)
GTATTTGTTTCTGAATCCTGCGCAT
NONE
OsAffx.24787.1.S1_at--54--8271Chr02:29798035..29798059 (25 bp)
GGCAGCATGCTTCTTTGTCTATTGT
NONE
Target Sequence 
GTGTCTGTCGGAGATTACTCTTCCTATGACCACTATGTTAATGGAAGTCAAAGCAATGTTACAAAATACCTTGCAGAGCT
AAACCGCAAAAGATACTTTCTTTATGAGACCTTCAATATATTCAACAAATGGTATGGCCATATAGGCCTTGCAAATCCTG
CTAGGGGAAATTTAGGTATCCTCCTTGGGCTGAGATCAAGCCTATGCCACCATTATCATTTTCCTCTTGCACAAGGGTGG
GAAAATCCTTATGTTATTGGTTATAATGTTCTTGACCTTGCAAGGCCAAGATTAATCTTCTGTTTCCTTGATGAGTTGCG
AGTTTGCGACATTCCTGTCAAGCTGATACATTTGTCATGGTTAACGAGAAAGAACATATATGGTGTATTTGTTTCTGAAT
CCTGCGCATGGCAGCATGCTTCTTTGTCTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis