Browse Element(s) Details


OsAffx.24795.1.S1_at

Description tigr:9630.m04805
TID=OsAffx.24795.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4917011/11hypothetical protein
LOC_Os11g118801/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed
LOC_Os02g49200OsAffx.3005.2.S1_at11/112+30072777..30074858hypothetical protein
LOC_Os02g49210OsAffx.3005.1.S1_at11/112+30075722..30079876hypothetical protein
LOC_Os02g49210OsAffx.3005.2.S1_at9/112+30075722..30079876hypothetical protein
LOC_Os02g49220OsAffx.12562.1.S1_at11/112+30081224..30081764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24795.1.S1_at--61--4891Chr02:30061060..30061084 (25 bp)
GCTTTGGGAGCACCTTCGATCAGTG
LOC_Os02g49170
OsAffx.24795.1.S1_at--961--1431Chr02:30060942..30060966 (25 bp)
AGAACTCAATTCCAGCACAAGCCAA
LOC_Os02g49170
OsAffx.24795.1.S1_at--1025--6191Chr02:30060827..30060851 (25 bp)
GAGGCCTGTCACACCCGGATCGTTG
LOC_Os02g49170
OsAffx.24795.1.S1_at--414--5333Chr10:15302167..15302189 (23 bp)
GAAGTCCCGGCAGCTTTGGTGGATT
NONE
OsAffx.24795.1.S1_at--472--7932Chr07:24442987..24443011 (25 bp)
GGATTGCTCTTAGTGCTATCGGTCA
NONE
OsAffx.24795.1.S1_at--150--4872Chr07:24442973..24442997 (25 bp)
GCTATCGGTCATTCCGAATGTCTAC
NONE
OsAffx.24795.1.S1_at--747--5272Chr07:24442958..24442982 (25 bp)
GAATGTCTACCTCTCAACGAGCAGT
NONE
OsAffx.24795.1.S1_at--582--2591Chr02:30060684..30060708 (25 bp)
AACGAGCAGTCTTTTCATGCCTATG
LOC_Os02g49170
OsAffx.24795.1.S1_at--809--10531Chr02:30060671..30060695 (25 bp)
TTCATGCCTATGACAGTCCCAAAAG
LOC_Os02g49170
OsAffx.24795.1.S1_at--1013--9611Chr02:30060634..30060658 (25 bp)
TCATCGCCGAGGGTTTGACACAATT
LOC_Os02g49170
OsAffx.24795.1.S1_at--185--5633Chr11:6587268..6587292 (25 bp)
GACACAATTGCGACACTGGTAGCGT
LOC_Os11g11880
Target Sequence 
GCTTTGGGAGCACCTTCGATCAGTGCAGCTGTCTGATGAGCCGGACAAGCTTTCTTGGCGTTGGGAGAACTCAGGGCAGT
ACTCCTCCCGCTCGGCTTATCGTATTCTCTTCTTGGGGAGAACTCAATTCCAGCACAAGCCAATCTGGAAGTCTTTCGCC
CCTCCTCAATGCCGCTACTTCCTCTGGCTGGTCGCTCTCAAGCGATGCTGGACGGCGGACCGCCTTCGAAGCCGAGGCCT
GTCACACCCGGATCGTTGCCCCCTCTGCGATCAATGCGACGAAATGATTGATCATCTCCTGGTCGCATGCCCGAAGTCCC
GGCAGCTTTGGTGGATTGCTCTTAGTGCTATCGGTCATTCCGAATGTCTACCTCTCAACGAGCAGTCTTTTCATGCCTAT
GACAGTCCCAAAAGGATGATTAAGGATCATCGCCGAGGGTTTGACACAATTGCGACACTGGTAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis