Browse Element(s) Details


OsAffx.24805.1.S1_s_at

Description tigr:9630.m04912
TID=OsAffx.24805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY056102 At1g70670F5A18_15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5014011/11ABA-induced protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50120NANA2+30607894..30609043retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g50130Os.12035.1.S1_at11/112+30619799..30620996hydrolase, NUDIX family protein, expressed
LOC_Os02g50140OsAffx.24805.1.S1_s_at11/112+30625495..30626800ABA-induced protein, putative
LOC_Os02g50150OsAffx.24806.1.S1_at11/112+30630253..30632610Caleosin related protein
LOC_Os02g50150OsAffx.28165.1.S1_at1/112+30630253..30632610Caleosin related protein
LOC_Os02g50174OsAffx.12573.1.S1_s_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174Os.9760.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.12573.1.S1_at11/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50174OsAffx.26548.1.S1_at3/112+30636523..30648727Caleosin related protein, expressed
LOC_Os02g50200Os.56026.1.A1_at10/112+30649418..3065051633 kDa secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24805.1.S1_s_at--308--3191Chr02:30625548..30625572 (25 bp)
CAATATCCTCTGTGGCACGCGCGCG
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--75--1511Chr02:30625717..30625741 (25 bp)
AGCACGTGGCGTTCTTCGACAGCAA
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--1032--9351Chr02:30625732..30625756 (25 bp)
TCGACAGCAACCACGACGGCATCAT
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--1082--9491Chr02:30625762..30625951 (25 bp)
TCTCCGAGACGTACGAAGGGTTCCG
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--48--1251Chr02:30625967..30625991 (25 bp)
AGTTGTTACCTCCAGATTCAGCGCG
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--378--5151Chr02:30626155..30626179 (25 bp)
GCAACAGCATCACGGTTTTCTATCT
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--1160--7391Chr02:30626213..30626237 (25 bp)
GTGATACTGGCGCATTCGATTCAGA
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--1131--831Chr02:30626468..30626492 (25 bp)
ATGGCCTGACAGCAGCCGAACTGGA
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--643--6331Chr02:30626496..30626520 (25 bp)
GATGCTTCGTGCAAACAGAGAACCC
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--234--1831Chr02:30626672..30626696 (25 bp)
ACGACGTTCAAGCTCGGGAAGGACA
LOC_Os02g50140
OsAffx.24805.1.S1_s_at--772--2911Chr02:30626696..30626720 (25 bp)
AAGGATGGTTTCCTTCGCAAGGACA
LOC_Os02g50140
Target Sequence 
CAATATCCTCTGTGGCACGCGCGCGAAAGGGAGCCCGGCGGCGGCGGCGGCGGTTGGCGCTGCGACGGAACTGCAGAAGC
ACGTGGCGTTCTTCGACAGCAACCACGACGGCATCATCTCCTTCTCCGAGACGTACGAAGGGTTCCGTGCGCTCGGATTT
GGAGTTGTTACCTCCAGATTCAGCGCGACCGTAATCAATGGCGCCCTCGGTACCAAGACCAGACCTGAAAATGCAACAGC
ATCACGGTTTTCTATCTATATAGAGAACATCCACAAAGGGGTCCATGGAAGTGATACTGGCGCATTCGATTCAGAAGGAA
GGTTTGTCAATGAAAAGTTCGATGAGATATTTACCAAGCATGCAAAAACTGTACCCGATGGCCTGACAGCAGCCGAACTG
GACGAGATGCTTCGTGCAAACAGAGAACCCAAGGACTACAAAGGATGGGTCGGAGCATCGACGGAGTGGGAGACGACGTT
CAAGCTCGGGAAGGACAAGGATGGTTTCCTTCGCAAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24805.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis