Browse Element(s) Details


OsAffx.24829.1.S1_at

Description tigr:9630.m05099
TID=OsAffx.24829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5184011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24829.1.S1_at--42--7711Chr02:31751555..31751771 (25 bp)
GGGTGCCTATATTTTTAAGACATCC
LOC_Os02g51840
OsAffx.24829.1.S1_at--45--2111Chr02:31751766..31751790 (25 bp)
ACATCCATTTTCTTTTAAGCAATTG
LOC_Os02g51840
OsAffx.24829.1.S1_at--205--9551Chr02:31751776..31751800 (25 bp)
TCTTTTAAGCAATTGAACTCAACTA
LOC_Os02g51840
OsAffx.24829.1.S1_at--968--2531Chr02:31751791..31751815 (25 bp)
AACTCAACTAGTTCCTATCGAAGAA
LOC_Os02g51840
OsAffx.24829.1.S1_at--562--1231Chr02:31751800..31751824 (25 bp)
AGTTCCTATCGAAGAAGGCTCTGGA
LOC_Os02g51840
OsAffx.24829.1.S1_at--1127--2931Chr02:31751814..31751838 (25 bp)
AAGGCTCTGGAAAGCTCAGTACATT
LOC_Os02g51840
OsAffx.24829.1.S1_at--717--8511Chr02:31751821..31751845 (25 bp)
TGGAAAGCTCAGTACATTGTCTTTT
LOC_Os02g51840
OsAffx.24829.1.S1_at--1140--9551Chr02:31751840..31751864 (25 bp)
TCTTTTGTTCTGCAGACGATGGTGT
LOC_Os02g51840
OsAffx.24829.1.S1_at--132--10271Chr02:31751843..31751867 (25 bp)
TTTGTTCTGCAGACGATGGTGTACT
LOC_Os02g51840
OsAffx.24829.1.S1_at--854--2251Chr02:31752104..31752128 (25 bp)
AAATAGAGCAGATCGGTCTCGCATA
LOC_Os02g51840
OsAffx.24829.1.S1_at--981--5611Chr02:31752227..31752251 (25 bp)
GACAACCAGCTGTTGATGTAAAACT
LOC_Os02g51840
Target Sequence 
GGGTGCCTATATTTTTAAGACATCCATTTTCTTTTAAGCAATTGAACTCAACTAGTTCCTATCGAAGAAGGCTCTGGAAA
GCTCAGTACATTGTCTTTTGTTCTGCAGACGATGGTGTACTCTCTTTCCTACGGCATCATGACTGGGACATACTTGTCAT
GGAGGCTCATCTTCATGTGCCTTCAGATGATGACAAGCAGAAAACACTCAAGATAAACCTTATAGACTGTCCTGATCATC
CTAGTAGAGTATCCGACTGTGAGAGTATTCCTTGGGAACGTCAAGAACAGGAGAGTTAACTATATACCAACTTGATGTAG
AGTTGAAGACACCTACCTTTCTGCCAACACTCAGAAAAAATAGAGCAGATCGGTCTCGCATAGCGATGGCTGATTCGGTG
CTTGGCTTCCCTCTCTATAGCGTGTGTTTGGGCGGTTGGCACATGGTTCGGGGCGTGTGCTCTGGTGCACATCCTTCCTC
GACAACCAGCTGTTGATGTAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis