Browse Element(s) Details


OsAffx.24848.1.S1_at

Description tigr:9630.m05270
TID=OsAffx.24848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5331011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53280OsAffx.12623.1.S1_at11/112+32605828..32608480expressed protein
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24848.1.S1_at--586--5791Chr02:32632848..32632872 (25 bp)
GACGCACTGCCCCGTGATCGTGAGC
LOC_Os02g53310
OsAffx.24848.1.S1_at--552--6191Chr02:32632911..32632935 (25 bp)
GAGGACAACACGGACGCGGCAACAG
LOC_Os02g53310
OsAffx.24848.1.S1_at--1040--8131Chr02:32632913..32632937 (25 bp)
GGACAACACGGACGCGGCAACAGAT
LOC_Os02g53310
OsAffx.24848.1.S1_at--612--10031Chr02:32632945..32632969 (25 bp)
TAGAGTGCGAAGGTGTTGCCCTCAC
LOC_Os02g53310
OsAffx.24848.1.S1_at--222--6111Chr02:32632947..32632971 (25 bp)
GAGTGCGAAGGTGTTGCCCTCACCA
LOC_Os02g53310
OsAffx.24848.1.S1_at--992--7271Chr02:32632949..32632973 (25 bp)
GTGCGAAGGTGTTGCCCTCACCACC
LOC_Os02g53310
OsAffx.24848.1.S1_at--870--9451Chr02:32632978..32633001 (24 bp)
TCGGCGCAGAGCACAACGAGCACGA
LOC_Os02g53310
OsAffx.24848.1.S1_at--814--8391Chr02:32632980..32633001 (22 bp)
GGCGCAGAGCACAACGAGCACGATG
LOC_Os02g53310
OsAffx.24848.1.S1_at--1027--1351Chr02:32632985..32633085 (25 bp)
AGAGCACAACGAGCACGATGCGGCC
LOC_Os02g53310
OsAffx.24848.1.S1_at--461--6311Chr02:32633305..32633329 (25 bp)
GATGACGAAGGAAGCGGTTGCCGGT
LOC_Os02g53310
OsAffx.24848.1.S1_at--457--2931Chr02:32633312..32633336 (25 bp)
AAGGAAGCGGTTGCCGGTGATGAGC
LOC_Os02g53310
Target Sequence 
GACGCACTGCCCCGTGATCGTGAGCTCCTCGCCGGCGGCGTCGGCACCGGCGCAGGGGAGGAGGAGGACAACACGGACGC
GGCAACAGATGAGGAAGTAGAGTGCGAAGGTGTTGCCCTCACCACCGCCGTCGGCGCAGAGCACAACGAGCACGATGCGG
CCGTCTACGACGAGCTCCGGCGTGGGACATGGATGACGAAGGACACGGCTGTCGGCGACGAGCTCCATCGTGGGACGTGG
ATGACGAAGGAAGCGGTTGCCGGTGATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis