Browse Element(s) Details


OsAffx.24861.1.S1_at

Description tigr:9630.m05351
TID=OsAffx.24861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5404011/11hypothetical protein
LOC_Os10g310808/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g445901/11ATP-dependent protease La, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54030Os.25444.1.S1_at11/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54030OsAffx.3061.1.S1_x_at9/112+33091467..33092941Polygalacturonase family protein, expressed
LOC_Os02g54040OsAffx.24861.1.S1_at11/112+33096757..33097035hypothetical protein
LOC_Os02g54050OsAffx.12633.1.S1_at11/112+33101876..33102544AP2 domain containing protein, expressed
LOC_Os02g54060Os.49874.2.S1_x_at11/112+33108913..3311143420 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os02g54070OsAffx.3062.1.S1_at11/112+33112011..33117694hypothetical protein
LOC_Os02g54080Os.51632.1.S1_at11/112+33118548..33121760expressed protein
LOC_Os02g54080Os.10495.1.S1_at11/112+33118548..33121760expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24861.1.S1_at--922--7773Chr10:15932856..15932880 (25 bp)
GGTCCACCGCGGAGATGGTCAACGA
LOC_Os10g31080
OsAffx.24861.1.S1_at--497--7273Chr10:15932857..15932881 (25 bp)
GTCCACCGCGGAGATGGTCAACGAC
LOC_Os10g31080
OsAffx.24861.1.S1_at--595--9213Chr10:15932858..15932882 (25 bp)
TCCACCGCGGAGATGGTCAACGACG
LOC_Os10g31080
OsAffx.24861.1.S1_at--1007--4353Chr10:15932859..15932883 (25 bp)
CCACCGCGGAGATGGTCAACGACGA
LOC_Os10g31080
OsAffx.24861.1.S1_at--859--3353Chr10:15932860..15932884 (25 bp)
CACCGCGGAGATGGTCAACGACGAC
LOC_Os10g31080
OsAffx.24861.1.S1_at--149--1793Chr10:15932861..15932885 (25 bp)
ACCGCGGAGATGGTCAACGACGACG
LOC_Os10g31080
OsAffx.24861.1.S1_at--1011--8196Chr10:15932906..15933093 (25 bp)
GGAAGTCGGCGAGGAGGTCACGGAG
LOC_Os10g31080
OsAffx.24861.1.S1_at--724--2851Chr02:33096873..33096897 (25 bp)
AAGTCGGCGAGGAGGTCACGGAGGG
LOC_Os02g54040
OsAffx.24861.1.S1_at--895--3931Chr02:33096908..33096932 (25 bp)
CGGACGCTGGCACGACCGTCGCCGG
LOC_Os02g54040
OsAffx.24861.1.S1_at--863--3812Chr02:33096979..33097003 (25 bp)
CTGCCTTCGTACTGCCGTGCTGGTG
LOC_Os02g54040
OsAffx.24861.1.S1_at--862--9175Chr10:15933031..15933054 (24 bp)
TGCCTTCGTACTGCCGTGCTGGTGC
LOC_Os10g31080
Target Sequence 
GGTCCACCGCGGAGATGGTCAACGACGACGGCTGCAACGGTGGTGGAGAGAGAGGAAGTCGGCGAGGAGGTCACGGAGGG
GCGCGGGGAGCGGACGCTGGCACGACCGTCGCCGGTGCCGTGCTGCCATCCGCCACCGTGCTGCCGTGCTGCCATCCGCG
CCTGCCTTCGTACTGCCGTGCTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis