Browse Element(s) Details


OsAffx.24864.1.S1_x_at

Description tigr:9630.m05396
TID=OsAffx.24864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5442011/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24864.1.S1_x_at--129--8811Chr02:33340934..33340958 (25 bp)
TGTTCGCCGGCGAGCCCTACGACTA
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--493--1391Chr02:33340901..33340925 (25 bp)
AGACGGACGACGACACCTACTACCG
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--854--4631Chr02:33340830..33340854 (25 bp)
GCGTACTACGGGTTCCTGACGCCGT
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--520--9891Chr02:33340827..33340851 (25 bp)
TACTACGGGTTCCTGACGCCGTGCC
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--962--5811Chr02:33340797..33340821 (25 bp)
GACCCGAGGACGCAGTACATGTCCG
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--658--4231Chr02:33340794..33340818 (25 bp)
CCGAGGACGCAGTACATGTCCGGCA
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--866--1811Chr02:33340725..33340749 (25 bp)
ACGCCGGAGCTCCAGAACGACCTGA
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--991--2211Chr02:33340688..33340712 (25 bp)
ACAAGCTGTTCGGCCGTTGGCTGCG
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--258--8311Chr02:33340602..33340626 (25 bp)
GGCGGGATGCGGCACGGGCCGACGT
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--508--4411Chr02:33340571..33340595 (25 bp)
GCCACCTGCTCCAGGCGGACACGGT
LOC_Os02g54420
OsAffx.24864.1.S1_x_at--398--911Chr02:33340559..33340583 (25 bp)
AGGCGGACACGGTCGCCGTCCACAA
LOC_Os02g54420
Target Sequence 
TGTTCGCCGGCGAGCCCTACGACTACGTCGGCAAGACGGACGACGACACCTACTACCGCCTGGGCGCGCTCGCCGACGCG
CTCCGGGACAAGCCGCGGCGCGACGCGTACTACGGGTTCCTGACGCCGTGCCACGCCGACCCGAGGACGCAGTACATGTC
CGGCATGGGGTACGTCGTGTCGTGGGACGTGGCGGCGTGGGTGGCGGCGACGCCGGAGCTCCAGAACGACCTGAAGGGGC
CGGAGGACAAGCTGTTCGGCCGTTGGCTGCGGTGGGGTGGCAGGGGGAGGAACGTGTTCGGCGCGGAGCCGCGGATGTAC
GACTACCTCGACGGCGGGATGCGGCACGGGCCGACGTGCTTCCGCCACCTGCTCCAGGCGGACACGGTCGCCGTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis