Browse Element(s) Details


OsAffx.24872.1.S1_at

Description tigr:9630.m05454
TID=OsAffx.24872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5494011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54900OsAffx.12646.1.S1_at10/112+33618117..33624074protein kinase family protein, putative, expressed
LOC_Os02g54910Os.15967.1.S1_at11/112+33623704..33627745transport protein, putative, expressed
LOC_Os02g54920Os.56117.1.S1_at11/112+33629089..33629613expressed protein
LOC_Os02g54930OsAffx.12647.1.S1_at11/112+33635603..33638439expressed protein
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein
LOC_Os02g54950OsAffx.29313.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54950Os.14919.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24872.1.S1_at--444--3511Chr02:33644867..33644891 (25 bp)
CATGTGAGCGAAGGATGTGACAGAA
LOC_Os02g54940
OsAffx.24872.1.S1_at--877--8671Chr02:33644882..33644906 (25 bp)
TGTGACAGAAGCAGACCAAAGGAAC
LOC_Os02g54940
OsAffx.24872.1.S1_at--484--951Chr02:33644911..33644935 (25 bp)
AGGAAATCTTATGGCGTTCTTACCT
LOC_Os02g54940
OsAffx.24872.1.S1_at--405--871Chr02:33644921..33644945 (25 bp)
ATGGCGTTCTTACCTAAGCAGGAAA
LOC_Os02g54940
OsAffx.24872.1.S1_at--749--5811Chr02:33645219..33645243 (25 bp)
GACCCACACCACTTGCATCTGTGTT
LOC_Os02g54940
OsAffx.24872.1.S1_at--284--2071Chr02:33645229..33645253 (25 bp)
ACTTGCATCTGTGTTCACCGATAAG
LOC_Os02g54940
OsAffx.24872.1.S1_at--37--6171Chr02:33645288..33645312 (25 bp)
GAGGTTGACACCGTCCCTCAATCTG
LOC_Os02g54940
OsAffx.24872.1.S1_at--624--8071Chr02:33645338..33645362 (25 bp)
GGAGCTTCTCATCCAATACGGCGAC
LOC_Os02g54940
OsAffx.24872.1.S1_at--352--4911Chr02:33645341..33645365 (25 bp)
GCTTCTCATCCAATACGGCGACAAG
LOC_Os02g54940
OsAffx.24872.1.S1_at--545--571Chr02:33645348..33645372 (25 bp)
ATCCAATACGGCGACAAGGAGCGGA
LOC_Os02g54940
OsAffx.24872.1.S1_at--529--6471Chr02:33645413..33645437 (25 bp)
GATAACAGTTGTGGCGCCGCCGGCT
LOC_Os02g54940
Target Sequence 
CATGTGAGCGAAGGATGTGACAGAAGCAGACCAAAGGAACAAACAGGAAATCTTATGGCGTTCTTACCTAAGCAGGAAAA
ACCAGGAAAATTCGTCGACCCACACCACTTGCATCTGTGTTCACCGATAAGGGGTGGAGAAGAGGGGCCGCCTCAATCCG
CCGCCGAGGTTGACACCGTCCCTCAATCTGCCAAGGTTGAGCTCGGCGGCACCGTGGAGCTTCTCATCCAATACGGCGAC
AAGGAGCGGATGGCGACGAAAAGGGCGAAACCGGCTGGTGGGAGTGGGAGGATAACAGTTGTGGCGCCGCCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis