Browse Element(s) Details


OsAffx.24887.1.S1_at

Description tigr:9630.m05540
TID=OsAffx.24887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5585011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed
LOC_Os02g55890Os.12069.1.S1_at11/112+34204555..34209016Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24887.1.S1_at--308--9191Chr02:34183683..34183707 (25 bp)
TGCCTCTCCTATCCTGATGCGGGCG
LOC_Os02g55850
OsAffx.24887.1.S1_at--881--9491Chr02:34183687..34183711 (25 bp)
TCTCCTATCCTGATGCGGGCGACGA
LOC_Os02g55850
OsAffx.24887.1.S1_at--683--3811Chr02:34183688..34183712 (25 bp)
CTCCTATCCTGATGCGGGCGACGAC
LOC_Os02g55850
OsAffx.24887.1.S1_at--73--9451Chr02:34183720..34183744 (25 bp)
TCGGCAAACGGCAAAGCGACCTCAA
LOC_Os02g55850
OsAffx.24887.1.S1_at--1144--8211Chr02:34183722..34183746 (25 bp)
GGCAAACGGCAAAGCGACCTCAACG
LOC_Os02g55850
OsAffx.24887.1.S1_at--860--5131Chr02:34183723..34183747 (25 bp)
GCAAACGGCAAAGCGACCTCAACGA
LOC_Os02g55850
OsAffx.24887.1.S1_at--1127--2371Chr02:34183725..34183749 (25 bp)
AAACGGCAAAGCGACCTCAACGACG
LOC_Os02g55850
OsAffx.24887.1.S1_at--989--8211Chr02:34183815..34183839 (25 bp)
GGCTCGGAGGAAGGCGGTTGCGGGC
LOC_Os02g55850
OsAffx.24887.1.S1_at--155--8111Chr02:34183842..34183866 (25 bp)
GGACGGCGCAGAGGGCCGAGATCAC
LOC_Os02g55850
OsAffx.24887.1.S1_at--191--6191Chr02:34183874..34183898 (25 bp)
GAGGACGGCTCGGAGGGCAGCATGC
LOC_Os02g55850
OsAffx.24887.1.S1_at--1108--9431Chr02:34183883..34183907 (25 bp)
TCGGAGGGCAGCATGCGCGGAGGAC
LOC_Os02g55850
Target Sequence 
TGCCTCTCCTATCCTGATGCGGGCGACGACGACAACCTCGGCAAACGGCAAAGCGACCTCAACGACGACCCGGGGCGTGG
AGGGTGGCGGCGGTCACGGACGGCGCGGAGGACGCCGGTCGCGGACGGGGACGGCTCGGAGGAAGGCGGTTGCGGGCGGG
GACGGCGCAGAGGGCCGAGATCACGGCCGGCGAGGACGGCTCGGAGGGCAGCATGCGCGGAGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis