Browse Element(s) Details


OsAffx.24899.1.S1_at

Description tigr:9630.m05637
TID=OsAffx.24899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5676010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56730Os.40360.1.S1_at9/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40360.1.S1_x_at8/112+34769347..34772576hypothetical protein
LOC_Os02g56730Os.40855.5.S1_x_at3/112+34769347..34772576hypothetical protein
LOC_Os02g56740Os.10826.1.S1_at11/112+34778302..34787518Nucleotidyl transferase family protein, expressed
LOC_Os02g56750Os.54857.1.S1_at11/112+34788376..34790766F-box domain containing protein, expressed
LOC_Os02g56760OsAffx.24899.1.S1_at10/112+34792412..34795604F-box domain containing protein
LOC_Os02g56770OsAffx.12673.1.S1_x_at11/112+34796215..34796659F-box domain containing protein, expressed
LOC_Os02g56780Os.47463.1.S1_x_at5/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56780Os.14491.2.S1_x_at4/112+34797090..34800790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56790NANA2+34803569..34806873transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g56800OsAffx.24900.1.S1_at10/112+34807723..34808821F-box family protein, putative
LOC_Os02g56810Os.6256.2.S1_at5/112+34811890..34813900F-box domain containing protein, expressed
LOC_Os02g56820OsAffx.12674.1.S1_at11/112+34815478..34819951F-box domain containing protein, expressed
LOC_Os02g56820Os.49877.1.S1_at1/112+34815478..34819951F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24899.1.S1_at--57--231Chr02:34794279..34794302 (24 bp)
ATATTCCTTACAGACGGGCTCACAA
LOC_Os02g56760
OsAffx.24899.1.S1_at--79--2251Chr02:34794466..34794490 (25 bp)
AAATTCGACGGACACCTGGCGCTTG
LOC_Os02g56760
OsAffx.24899.1.S1_at--283--1011Chr02:34794512..34794536 (25 bp)
AGGTTGTTCAACTATGCCCCTACTT
LOC_Os02g56760
OsAffx.24899.1.S1_at--1008--2031Chr02:34794533..34794557 (25 bp)
ACTTTGTTTGCGGAGCTCAGTTTCA
LOC_Os02g56760
OsAffx.24899.1.S1_at--466--5571NONE
GAAAGGTATTCCATGGTTCTCAGAA
NONE
OsAffx.24899.1.S1_at--639--9651Chr02:34795281..34795305 (25 bp)
TCAGAAGTTATCGAGCTCCCAGCTT
LOC_Os02g56760
OsAffx.24899.1.S1_at--143--1751Chr02:34795334..34795358 (25 bp)
ACCTTGCAAGATGCTGCCTGGAAAC
LOC_Os02g56760
OsAffx.24899.1.S1_at--334--10751Chr02:34795393..34795417 (25 bp)
TTGACGATTCATTCGGGCTGGCTAC
LOC_Os02g56760
OsAffx.24899.1.S1_at--427--6371Chr02:34795418..34795442 (25 bp)
GATCCTGGATGCATCAGTCAGCGTT
LOC_Os02g56760
OsAffx.24899.1.S1_at--241--8191Chr02:34795446..34795470 (25 bp)
GGAAGCCTATGCACAACTCGCCAAG
LOC_Os02g56760
OsAffx.24899.1.S1_at--766--2831Chr02:34795468..34795492 (25 bp)
AAGTTTGCTTCGACAGCACCAGCAG
LOC_Os02g56760
Target Sequence 
ATATTCCTTACAGACGGGCTCACAAGTATGTGGTTAGACATGGAGACTGGGTTTAAGTGCTACATGCTGTCGGCCAGGGC
GCTGCAGCTTGCAAATTCGACGGACACCTGGCGCTTGATCTCTCTCACTGGTGCCTCCAGGTTGTTCAACTATGCCCCTA
CTTTGTTTGCGGAGCTCAGTTTCATAAAATTTACAAAGCTATTATACTCTAAATCTCTAATGCTTTTGAAAGGTATTCCA
TGGTTCTCAGAAGTTATCGAGCTCCCAGCTTGTTATGAATTGGTGATCTGTGGCAAGATACCTTGCAAGATGCTGCCTGG
AAACACAAATTACGCTGCTTACATCGTGTTCGTGGTAGTTGACGATTCATTCGGGCTGGCTACGATCCTGGATGCATCAG
TCAGCGTTGGGGGAAGCCTATGCACAACTCGCCAAGTTTGCTTCGACAGCACCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis