Browse Element(s) Details


OsAffx.24944.1.S1_at

Description tigr:9631.m00188
TID=OsAffx.24944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g027909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02756Os.6004.1.S1_a_at10/113+1045101..10540181,3-beta-glucan synthase component bgs3, putative, expressed
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24944.1.S1_at--304--4891Chr03:1061050..1061074 (25 bp)
GCTTTGCCACATATCACCATTTTGA
LOC_Os03g02790
OsAffx.24944.1.S1_at--245--1731Chr03:1061065..1061089 (25 bp)
ACCATTTTGATAACTGTCCTGAACC
LOC_Os03g02790
OsAffx.24944.1.S1_at--429--3571Chr03:1061099..1061123 (25 bp)
CATATCTGGATGTCTGATTCAGCAT
LOC_Os03g02790
OsAffx.24944.1.S1_at--300--451Chr03:1061227..1061251 (25 bp)
ATCTCACAGCTTTCCACTGGTTGGT
LOC_Os03g02790
OsAffx.24944.1.S1_at--466--8631NONE
TGGGTCGGCATGACTGTTTCTACCA
NONE
OsAffx.24944.1.S1_at--657--5731Chr03:1063536..1063556 (21 bp)
GACTGTTTCTACCACCAGATATGAA
LOC_Os03g02790
OsAffx.24944.1.S1_at--139--191Chr03:1063612..1063636 (25 bp)
ATTTATGCTGTGTCTTTTGGCTCTC
LOC_Os03g02790
OsAffx.24944.1.S1_at--727--10851Chr03:1063628..1063889 (25 bp)
TTGGCTCTCCAATGCTATATTACCT
LOC_Os03g02790
OsAffx.24944.1.S1_at--643--231NONE
ATATTACCTCTGAGCAATGCTGTCA
NONE
OsAffx.24944.1.S1_at--557--6091Chr03:1063906..1063930 (25 bp)
GAGTGAGTCCTCAAACTTGGCTTAT
LOC_Os03g02790
OsAffx.24944.1.S1_at--527--6471Chr03:1064284..1064308 (25 bp)
GATAAAGTTTTCTGCCCTGGTTATA
LOC_Os03g02790
Target Sequence 
GCTTTGCCACATATCACCATTTTGATAACTGTCCTGAACCAAATTTATCCATATCTGGATGTCTGATTCAGCATGAAAAT
ATCTCACAGCTTTCCACTGGTTGGTGGGTCGGCATGACTGTTTCTACCACCAGATATGAAGCTGGCAAGCAGAACTGCAG
TAGTCTGAACTGGAAACTGATTGAAGTTAATGACAATTTATGCTGTGTCTTTTGGCTCTCCAATGCTATATTACCTCTGA
GCAATGCTGTCAGAGTGAGTCCTCAAACTTGGCTTATTAGATTTAGTGTAGAGAAATACGAACTTTATGTCTTATGGATT
GAACAGCAGGAACTGTCTACAATGGAAACAGATAAAGTTTTCTGCCCTGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis