Browse Element(s) Details


OsAffx.24968.1.S1_at

Description tigr:9631.m00421
TID=OsAffx.24968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CYFIP2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0502011/11PIROGI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04980Os.9928.1.S1_at11/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.2.S1_x_at2/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04980Os.9932.1.S1_x_at1/113+2388972..2392542PHD-finger family protein, expressed
LOC_Os03g04990Os.18674.1.S1_at11/113+2394731..2398679expressed protein
LOC_Os03g05000Os.28943.1.S1_x_at1/113+2401005..2404238retrotransposon protein, putative, unclassified
LOC_Os03g05010NANA3+2405073..2407904retrotransposon protein, putative, unclassified
LOC_Os03g05020Os.14070.1.S1_s_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05020OsAffx.24968.1.S1_at11/113+2412033..2428210PIROGI, putative, expressed
LOC_Os03g05030OsAffx.3136.1.S1_at11/113+2428537..2429364disease resistance-responsive family protein, putative
LOC_Os03g05040Os.52236.1.S1_at5/113+2429719..2434387expressed protein
LOC_Os03g05060Os.53691.1.S1_at11/113+2445571..2447451Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os03g05070Os.50602.1.S1_at11/113+2450381..2452132Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24968.1.S1_at--1154--2211Chr03:2427533..2427557 (25 bp)
ACAAGAAATGTTGGGTGACTCTGTA
LOC_Os03g05020
OsAffx.24968.1.S1_at--1001--5711Chr03:2427549..2427573 (25 bp)
GACTCTGTAGCTTGGGCTGGCTGTA
LOC_Os03g05020
OsAffx.24968.1.S1_at--1007--6951Chr03:2427555..2427579 (25 bp)
GTAGCTTGGGCTGGCTGTACAATCA
LOC_Os03g05020
OsAffx.24968.1.S1_at--859--3611Chr03:2427559..2427583 (25 bp)
CTTGGGCTGGCTGTACAATCATGTA
LOC_Os03g05020
OsAffx.24968.1.S1_at--961--7571Chr03:2427562..2427586 (25 bp)
GGGCTGGCTGTACAATCATGTATTT
LOC_Os03g05020
OsAffx.24968.1.S1_at--41--8491Chr03:2427566..2427590 (25 bp)
TGGCTGTACAATCATGTATTTACTG
LOC_Os03g05020
OsAffx.24968.1.S1_at--331--10311Chr03:2427614..2427638 (25 bp)
TTTCGACTTCTCTTACCAATTTCTC
LOC_Os03g05020
OsAffx.24968.1.S1_at--389--5691Chr03:2427618..2427642 (25 bp)
GACTTCTCTTACCAATTTCTCAACG
LOC_Os03g05020
OsAffx.24968.1.S1_at--158--9991Chr03:2427627..2427651 (25 bp)
TACCAATTTCTCAACGTGGCAGAAG
LOC_Os03g05020
OsAffx.24968.1.S1_at--415--2291Chr03:2427656..2427680 (25 bp)
AAATGCAACAGTTTCACTTTATCAA
LOC_Os03g05020
OsAffx.24968.1.S1_at--241--2491Chr03:2427662..2427686 (25 bp)
AACAGTTTCACTTTATCAATATTCA
LOC_Os03g05020
Target Sequence 
ACAAGAAATGTTGGGTGACTCTGTAGCTTGGGCTGGCTGTACAATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGC
TTTTCGACTTCTCTTACCAATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis