Browse Element(s) Details


OsAffx.25025.1.S1_at

Description tigr:9631.m00870
TID=OsAffx.25025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0920011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25025.1.S1_at--683--4151Chr03:4776151..4776175 (25 bp)
CGCCCAGCCACAAGCAGTACGTGGA
LOC_Os03g09200
OsAffx.25025.1.S1_at--1000--1691Chr03:4776146..4776170 (25 bp)
AGCCACAAGCAGTACGTGGACAGCT
LOC_Os03g09200
OsAffx.25025.1.S1_at--793--9931Chr03:4776134..4776158 (25 bp)
TACGTGGACAGCTACCGGGACGACG
LOC_Os03g09200
OsAffx.25025.1.S1_at--280--8071Chr03:4776010..4776034 (25 bp)
GGAGCCGCCCGGTGGAGCTGCCCGT
LOC_Os03g09200
OsAffx.25025.1.S1_at--513--4691Chr03:4775917..4775941 (25 bp)
GCGGCGGCCGCGGTAGTGACGAGAC
LOC_Os03g09200
OsAffx.25025.1.S1_at--458--1391Chr03:4775896..4775920 (25 bp)
AGACCGAGTCGAACAGGGCCGGCTC
LOC_Os03g09200
OsAffx.25025.1.S1_at--859--2491Chr03:4775885..4775909 (25 bp)
AACAGGGCCGGCTCGATGCTCCTGC
LOC_Os03g09200
OsAffx.25025.1.S1_at--1032--2851Chr03:4775819..4775843 (25 bp)
AAGTGCCGGACCGAGCCGAGGCGGA
LOC_Os03g09200
OsAffx.25025.1.S1_at--549--5311Chr03:4775673..4775697 (25 bp)
GAAGGAGTACTTCAGCGGCAGCATC
LOC_Os03g09200
OsAffx.25025.1.S1_at--173--991Chr03:4775671..4775695 (25 bp)
AGGAGTACTTCAGCGGCAGCATCGT
LOC_Os03g09200
OsAffx.25025.1.S1_at--72--8271Chr03:4775657..4775681 (25 bp)
GGCAGCATCGTGGAGAGCGGAGTCA
LOC_Os03g09200
Target Sequence 
CGCCCAGCCACAAGCAGTACGTGGACAGCTACCGGGACGACGCCGCGGAGGATCCCGAGGACGACGAGCTGGGGTACGGC
TACCACCGGCGAGCCGGCGGCGCTCGCCTCGCTGCGAAGCCCGTCTCGGCGCGCACCAACCGGAGCCGCCCGGTGGAGCT
GCCCGTGGAGGAGACCTCGCCGCCGTCGTCGACCTCCTCCGACAAGCCCCCTGCCGCGCCGCAGCTGCAGCCGGGCGGCG
GCCGCGGTAGTGACGAGACCGAGTCGAACAGGGCCGGCTCGATGCTCCTGCAGCTCATCGCCTGCGGGTCGGCGGCCGGC
GGCGGCTCGGCCAAGTGCCGGACCGAGCCGAGGCGGAGCTGCGGCCTGGTGAGCCGGCTGGCGGCGGCCTCACGCGCCGG
CACGGAGGTCGACGACGACGAGGAGGCCGGCGGCGGCGGCGAGCTGAGCCGGCGGTTCGGCCACCTGGCGGTGGAGGAGA
AGGAGTACTTCAGCGGCAGCATCGTGGAGAGCGGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis