Browse Element(s) Details


OsAffx.25043.1.S1_at

Description tigr:9631.m00987
TID=OsAffx.25043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1073011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10680Os.50397.1.S1_at11/113+5437214..5441439transposon protein, putative, unclassified, expressed
LOC_Os03g10689NANA3+5443201..5443393NA
LOC_Os03g10700Os.42235.1.S1_x_at1/113+5445904..5447548expressed protein
LOC_Os03g10700Os.42235.1.S1_at1/113+5445904..5447548expressed protein
LOC_Os03g10710OsAffx.25042.1.S1_at11/113+5451243..5453881hypothetical protein
LOC_Os03g10720NANA3+5456665..5457995hypothetical protein
LOC_Os03g10730OsAffx.25043.1.S1_at11/113+5458401..5459923hypothetical protein
LOC_Os03g10740OsAffx.3191.1.S1_s_at11/113+5460619..5461473expressed protein
LOC_Os03g10740Os.51343.1.S1_at11/113+5460619..5461473expressed protein
LOC_Os03g10750Os.7472.1.S1_at9/113+5462520..5468356CUE domain containing protein, expressed
LOC_Os03g10760OsAffx.12812.1.S1_at11/113+5473352..5474155expressed protein
LOC_Os03g10770OsAffx.3192.1.S1_at11/113+5474966..5476333Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25043.1.S1_at--221--6731Chr03:5458438..5458462 (25 bp)
GTTCTCCTCGGAGCGAATCTATCAT
LOC_Os03g10730
OsAffx.25043.1.S1_at--580--1011Chr03:5458479..5458503 (25 bp)
AGGTTCTGCTTGCTCACTGATTTGG
LOC_Os03g10730
OsAffx.25043.1.S1_at--720--2091Chr03:5458528..5458552 (25 bp)
ACATCGGTGAGCTAGTTTGCAATGC
LOC_Os03g10730
OsAffx.25043.1.S1_at--711--4851Chr03:5459450..5459474 (25 bp)
GCTACGCTCCGCCTTGAACAAGATA
LOC_Os03g10730
OsAffx.25043.1.S1_at--704--3291Chr03:5459476..5459500 (25 bp)
CAAAGTTATTTCTGCATGGGATCTA
LOC_Os03g10730
OsAffx.25043.1.S1_at--57--791Chr03:5459500..5459524 (25 bp)
ATGTGAAATTTGATCTCCTATGGAC
LOC_Os03g10730
OsAffx.25043.1.S1_at--364--8531Chr03:5459520..5459544 (25 bp)
TGGACATTGGTTCTCCTTGAATCCG
LOC_Os03g10730
OsAffx.25043.1.S1_at--838--5151Chr03:5459538..5459562 (25 bp)
GAATCCGCACCATCCGTTAAGGTTT
LOC_Os03g10730
OsAffx.25043.1.S1_at--53--631Chr03:5459763..5459787 (25 bp)
ATGCTGCACAGTTGGATGGCTCGAT
LOC_Os03g10730
OsAffx.25043.1.S1_at--1004--8311Chr03:5459780..5459804 (25 bp)
GGCTCGATACATTATTTGCAACTAG
LOC_Os03g10730
OsAffx.25043.1.S1_at--429--411Chr03:5459867..5459891 (25 bp)
ATCATTGAGCGTGCTCCAAACTTAA
LOC_Os03g10730
Target Sequence 
GTTCTCCTCGGAGCGAATCTATCATTAAAAAGCTAAACCTCAGGTTCTGCTTGCTCACTGATTTGGAGACATCATTAGAT
TATTTGTTTAACATCGGTGAGCTAGTTTGCAATGCTATTGACAGTGGTAAAGATATTGCTTTGGATTTCCAAGGAGAGGT
GATTTGGATTACACCTGAAGGAAAAAAGCTACGCTCCGCCTTGAACAAGATAACAAAGTTATTTCTGCATGGGATCTATG
TGAAATTTGATCTCCTATGGACATTGGTTCTCCTTGAATCCGCACCATCCGTTAAGGTTTTTGGTGTCAAGGTGTGGAAC
CATGCATGTGACGAGGGTACTGAGAATAGAAAACAATTGTATGAAAGAAATGATTTGTGGGATGCTGCACAGTTGGATGG
CTCGATACATTATTTGCAACTAGAGAGGTTAGAATTTGGTGGATTCAACCAAATAATAAGAGAACACTTGGATTTCATAA
GAGCTATCATTGAGCGTGCTCCAAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis