Browse Element(s) Details


OsAffx.25071.1.S1_at

Description tigr:9631.m01193
TID=OsAffx.25071.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1268011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed
LOC_Os03g12670Os.12264.2.S1_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.2.S2_a_at11/113+6733602..6736891expressed protein
LOC_Os03g12670Os.12264.1.S1_a_at3/113+6733602..6736891expressed protein
LOC_Os03g12680OsAffx.25071.1.S1_at11/113+6742625..6746800Protein kinase domain containing protein, expressed
LOC_Os03g12690OsAffx.25072.1.S1_at11/113+6753963..6754424hypothetical protein
LOC_Os03g12700OsAffx.25073.1.S1_x_at11/113+6755472..6757711expressed protein
LOC_Os03g12710Os.22583.1.A1_at11/113+6761807..6765093Clathrin adaptor complex small chain family protein, expressed
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25071.1.S1_at--336--5191Chr03:6743487..6743511 (25 bp)
GAATAGCGTACCTGCACGAAGGCCT
LOC_Os03g12680
OsAffx.25071.1.S1_at--575--891Chr03:6743468..6743492 (25 bp)
AGGCCTGGAGCCCAAAGTTGTGCAC
LOC_Os03g12680
OsAffx.25071.1.S1_at--1002--8491Chr03:6743404..6743428 (25 bp)
TGGAACCCCAAGGTATCCGACTTCG
LOC_Os03g12680
OsAffx.25071.1.S1_at--174--1571Chr03:6743350..6743374 (25 bp)
AGCTACGTGACCACCCGTGTCATGG
LOC_Os03g12680
OsAffx.25071.1.S1_at--428--8731Chr03:6743108..6743357 (25 bp)
TGTCATGGGCACGTTCGGCTATGTC
LOC_Os03g12680
OsAffx.25071.1.S1_at--738--10111Chr03:6743228..6743252 (25 bp)
TATGTCGCGCCTGAGTACGCTTCGA
LOC_Os03g12680
OsAffx.25071.1.S1_at--303--6091Chr03:6743216..6743240 (25 bp)
GAGTACGCTTCGACGGGCATGCTGA
LOC_Os03g12680
OsAffx.25071.1.S1_at--746--2771Chr03:6743135..6743159 (25 bp)
AAGAGACCCGTGGACTACAGCAAGT
LOC_Os03g12680
OsAffx.25071.1.S1_at--539--9131Chr03:6742897..6742921 (25 bp)
TGCTGGTGTGCCTCCGTTGCATCGA
LOC_Os03g12680
OsAffx.25071.1.S1_at--907--4671Chr03:6742673..6742697 (25 bp)
GCGGTGGCTTCTCGCAGAATCAAAA
LOC_Os03g12680
OsAffx.25071.1.S1_at--811--251Chr03:6742655..6742679 (25 bp)
ATCAAAAGTTTTCTCAGACAGTCCA
LOC_Os03g12680
Target Sequence 
GAATAGCGTACCTGCACGAAGGCCTGGAGCCCAAAGTTGTGCACCGAGACATCAAGTCGAGCAACATCCTCCTGGACAAG
AAGTGGAACCCCAAGGTATCCGACTTCGGGATGGCCAAGGTGCTCGGCTCCGGATCCAGCTACGTGACCACCCGTGTCAT
GGGCACGTTCGGCTATGTCGCGCCTGAGTACGCTTCGACGGGCATGCTGAACGAGAGCAGCGACATCTACAGCTTCGGCG
TGCTGCTGATGGAGCTCATCTCCGGGAAGAGACCCGTGGACTACAGCAAGTCTGTCGGCGAGGTGAACTTGGTGGAGTGG
TTCAAGGGGATGGTGGGGAGCAGGCGGGTGGAGCAGCTGGTCGACCCGCGGATCGAGGATCCGCCGGGGGCGAGGGCGCT
GAACAGGGTGCTGCTGGTGTGCCTCCGTTGCATCGACTCCGACGCGCACAAGCGGCCCAAGATGGGGCAGATCGTGCACA
TGCTCGAAGGCGACGAGTTCCCCTTCCGCACGCTGCGGTGGCTTCTCGCAGAATCAAAAGTTTTCTCAGACAGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis