Browse Element(s) Details


OsAffx.25100.1.S1_at

Description gb:NM_187524.1
DB_XREF= gi:34902133
TID=OsAffx.25100.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1041F02.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1568011/11GRAS family transcription factor containing protein
LOC_Os12g320201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15640OsAffx.12876.1.S1_at11/113+8606970..8607277hypothetical protein
LOC_Os03g15650Os.15443.1.S1_x_at11/113+8608814..8614218Vacuolar sorting protein 9 domain containing protein, expressed
LOC_Os03g15660Os.35111.1.S1_at11/113+8615018..8616152AP2 domain containing protein, expressed
LOC_Os03g15670OsAffx.12877.1.S1_at11/113+8620865..8621704hypothetical protein
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25100.1.S1_at--436--7274Chr12:16020246..16020270 (25 bp)
GTGCCAAGCTGGTCACGGTGGTCGA
NONE
OsAffx.25100.1.S1_at--32--5891Chr03:8631789..8631813 (25 bp)
GAGCTGCACCGCTACTCCGCGGTGT
LOC_Os03g15680
OsAffx.25100.1.S1_at--930--1991Chr03:8631802..8631826 (25 bp)
ACTCCGCGGTGTGGGACTCTCTCGA
LOC_Os03g15680
OsAffx.25100.1.S1_at--1090--8631Chr03:8631813..8631837 (25 bp)
TGGGACTCTCTCGAGGCCGGGTTCC
LOC_Os03g15680
OsAffx.25100.1.S1_at--593--9071Chr03:8631996..8632020 (25 bp)
TGCTTCAACCACAGCCAGGCGAGGC
LOC_Os03g15680
OsAffx.25100.1.S1_at--514--8551Chr03:8632054..8632078 (25 bp)
TGGAGGAGACGGGTCCCAACAAGAT
LOC_Os03g15680
OsAffx.25100.1.S1_at--234--1351Chr03:8632060..8632084 (25 bp)
AGACGGGTCCCAACAAGATCGTGCT
LOC_Os03g15680
OsAffx.25100.1.S1_at--27--9331Chr03:8632067..8632091 (25 bp)
TCCCAACAAGATCGTGCTCGGGTGG
LOC_Os03g15680
OsAffx.25100.1.S1_at--473--7451Chr03:8632167..8632191 (25 bp)
GTGTGCCAGCCCGTCGTCGGGATGG
LOC_Os03g15680
OsAffx.25100.1.S1_at--133--10651Chr03:8632212..8632236 (25 bp)
TTCGCGCGGACGGAGTTTGACTATA
LOC_Os03g15680
OsAffx.25100.1.S1_at--249--8031Chr03:8632223..8632247 (25 bp)
GGAGTTTGACTATATTGATTCGTTC
LOC_Os03g15680
Target Sequence 
GTGCCAAGCTGGTCACGGTGGTCGAGGAGGAAGGCGAAGCCGAGAAGGACGACGACGGCGACTCGGCCGGCGACGCCGCG
GCGGGCGGCTTCGTGCGGCAGTTCATGGAGGAGCTGCACCGCTACTCCGCGGTGTGGGACTCTCTCGAGGCCGGGTTCCC
GACGCAGAGCCGGGTGCGCGGCCTCGTGGAGCGCGTCATCCTCGCCCCCAACATCGCCGGCGCCGTGAGCCGCGCGTACC
GCGGCGTCGACGGCGAGGGGAGGTGCGGGTGGGGGCAGTGGATGCGCGGGAGCGGGTTCACCGCCGTGCCGCTCAGCTGC
TTCAACCACAGCCAGGCGAGGCTGCTGCTCGGCCTGTTCAACGACGGGTACACGGTGGAGGAGACGGGTCCCAACAAGAT
CGTGCTCGGGTGGAAGGCCCGGCGGCTGATGTCGGCGTCCGTGTGGGCGCCGCCGCCGCTGCCGGTGCCGTCGTCGCCGC
CGGAGGGGGTGTGCCAGCCCGTCGTCGGGATGGCGCCGGTGGCCACCGGTGGCTTCGCGCGGACGGAGTTTGACTATATT
GATTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis