Browse Element(s) Details


OsAffx.25140.1.S1_at

Description tigr:9631.m01899
TID=OsAffx.25140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19210OsAffx.12934.1.S1_at11/113+10775369..10775596hypothetical protein
LOC_Os03g19220Os.7016.1.S1_at11/113+10782927..10785605negatively light-regulated protein, putative, expressed
LOC_Os03g19230OsAffx.25140.1.S1_at11/113+10793729..10794286expressed protein
LOC_Os03g19240Os.14974.1.S1_at10/113+10794842..10799052AMP-binding enzyme family protein, expressed
LOC_Os03g19250Os.8742.1.S1_at11/113+10802985..10806315AMP-binding enzyme family protein, expressed
LOC_Os03g19260Os.55634.1.S1_at11/113+10810093..10811140expressed protein
LOC_Os03g19270Os.5583.1.S1_at11/113+10818292..10819618universal stress protein family protein, expressed
LOC_Os03g19270OsAffx.31409.1.S1_s_at8/113+10818292..10819618universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25140.1.S1_at--910--531Chr03:10793794..10793818 (25 bp)
ATCGCCCGAGGTCGATCTGAAGCCA
LOC_Os03g19230
OsAffx.25140.1.S1_at--635--6151Chr03:10793801..10793825 (25 bp)
GAGGTCGATCTGAAGCCACCTCTCT
LOC_Os03g19230
OsAffx.25140.1.S1_at--828--6371Chr03:10793827..10793851 (25 bp)
GATCCGCGCAACCAATGTCATTTCA
LOC_Os03g19230
OsAffx.25140.1.S1_at--114--2991Chr03:10793840..10793864 (25 bp)
AATGTCATTTCACCGCCAGCAACTT
LOC_Os03g19230
OsAffx.25140.1.S1_at--1063--1791Chr03:10793851..10793875 (25 bp)
ACCGCCAGCAACTTGGCAGCCAGGG
LOC_Os03g19230
OsAffx.25140.1.S1_at--381--7991Chr03:10793907..10793931 (25 bp)
GGATGTCGTCGGCTTTATCAGGCTC
LOC_Os03g19230
OsAffx.25140.1.S1_at--1148--8291Chr03:10793917..10793941 (25 bp)
GGCTTTATCAGGCTCGCCACCGGAT
LOC_Os03g19230
OsAffx.25140.1.S1_at--989--1591Chr03:10793967..10793991 (25 bp)
AGCTGAGTCCGAGCCAGATATGCCT
LOC_Os03g19230
OsAffx.25140.1.S1_at--374--1271Chr03:10793982..10794006 (25 bp)
AGATATGCCTCGAGCTCCAATCCGG
LOC_Os03g19230
OsAffx.25140.1.S1_at--1036--2611Chr03:10794147..10794171 (25 bp)
AACCCCGACGGATGGATCTGGCTGG
LOC_Os03g19230
OsAffx.25140.1.S1_at--746--831Chr03:10794158..10794182 (25 bp)
ATGGATCTGGCTGGCCCGTCGCTGC
LOC_Os03g19230
Target Sequence 
ATCGCCCGAGGTCGATCTGAAGCCACCTCTCTCGATCCGCGCAACCAATGTCATTTCACCGCCAGCAACTTGGCAGCCAG
GGGAGGGGGATGTGAGGGGACCGAGGGAGGTGAGGATGTCGTCGGCTTTATCAGGCTCGCCACCGGATCCCCCAAGGTCG
CCAGCCGAGAGGGAGCTGAGTCCGAGCCAGATATGCCTCGAGCTCCAATCCGGCGGGAGGATAGGAGCTCGACGACGGTT
GGGTGTGGCGTCGACAGGAGCTAGGCGGCGGTTGGGTGCAGCGGCGACAGGAGCTCGGGCACAATTGGGTGTGGCGGCGA
TTAGGTGTGAAGGTGGTGAAGCGGCGGCACCCCAACCCCGACGGATGGATCTGGCTGGCCCGTCGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis