Browse Element(s) Details


OsAffx.25165.1.S1_at

Description tigr:9631.m02026
TID=OsAffx.25165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2040010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20350OsAffx.25163.1.S1_at11/113+11496756..11498180hypothetical protein
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25165.1.S1_at--31--5491Chr03:11522240..11522264 (25 bp)
GAACTTAGATATCTCAGTGCCACGT
LOC_Os03g20400
OsAffx.25165.1.S1_at--1022--1131Chr03:11522225..11522249 (25 bp)
AGTGCCACGTCAAGCAACGCTGAAT
LOC_Os03g20400
OsAffx.25165.1.S1_at--285--5271Chr03:11522204..11522228 (25 bp)
GAATGCCGTGCCACTGTGGATGTGA
LOC_Os03g20400
OsAffx.25165.1.S1_at--131--8899Chr08:93661..93680 (20 bp)
TGAGGCTAAGTCAGCGTGCCAACTT
NONE
OsAffx.25165.1.S1_at--11--5011Chr03:11521999..11522023 (25 bp)
GCAGGACCAACAGGATTTGATCTCA
LOC_Os03g20400
OsAffx.25165.1.S1_at--258--8851Chr03:11521982..11522006 (25 bp)
TGATCTCAATCCGTAAAGCACAATG
LOC_Os03g20400
OsAffx.25165.1.S1_at--605--9931Chr03:11521937..11521961 (25 bp)
TACGTCCAGTCCAGTACAGGTCCAT
LOC_Os03g20400
OsAffx.25165.1.S1_at--378--2131Chr03:11521922..11521946 (25 bp)
ACAGGTCCATGTCCATGTGGCTTGC
LOC_Os03g20400
OsAffx.25165.1.S1_at--611--10691Chr03:11521901..11521925 (25 bp)
TTGCCTTTTCTCTGCAGGACATGTG
LOC_Os03g20400
OsAffx.25165.1.S1_at--448--2111Chr03:11521883..11521907 (25 bp)
ACATGTGGGCCCTCAAAGACAAGTG
LOC_Os03g20400
OsAffx.25165.1.S1_at--907--3211Chr03:11521864..11521888 (25 bp)
CAAGTGGAAAAGCTCCATGTCCTCT
LOC_Os03g20400
Target Sequence 
GAACTTAGATATCTCAGTGCCACGTCAAGCAACGCTGAATGCCGTGCCACTGTGGATGTGAGGCTAAGTCAGCGTGCCAA
CTTGCAGGACCAACAGGATTTGATCTCAATCCGTAAAGCACAATGGGCCCCCGTCTGTGTGGCTCTACGTCCAGTCCAGT
ACAGGTCCATGTCCATGTGGCTTGCCTTTTCTCTGCAGGACATGTGGGCCCTCAAAGACAAGTGGAAAAGCTCCATGTCC
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis