Browse Element(s) Details


OsAffx.25230.1.S1_at

Description tigr:9631.m02559
TID=OsAffx.25230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2607011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26020NANA3+14888191..14891800retrotransposon protein, putative, unclassified
LOC_Os03g26030OsAffx.25229.1.S1_x_at10/113+14894316..14903035expressed protein
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25230.1.S1_at--1113--891Chr03:14915633..14915657 (25 bp)
AGGCGGCGCAGAGCCTCTTCATGAT
LOC_Os03g26070
OsAffx.25230.1.S1_at--228--4651Chr03:14915704..14915728 (25 bp)
GCGGTGGGTACGCAACTACGACCAC
LOC_Os03g26070
OsAffx.25230.1.S1_at--435--3091Chr03:14916157..14916176 (20 bp)
AATACGCTATTACTTGCATCAAACA
LOC_Os03g26070
OsAffx.25230.1.S1_at--1158--1491Chr03:14916188..14916212 (25 bp)
AGCAGCCAAGCTTATTTCCAACGTC
LOC_Os03g26070
OsAffx.25230.1.S1_at--1159--10191Chr03:14916200..14916224 (25 bp)
TATTTCCAACGTCAGATCAATCAGG
LOC_Os03g26070
OsAffx.25230.1.S1_at--729--1271Chr03:14916213..14916237 (25 bp)
AGATCAATCAGGATGCTTCAGGCAA
LOC_Os03g26070
OsAffx.25230.1.S1_at--307--3651Chr03:14916228..14916595 (25 bp)
CTTCAGGCAAGAGCTATACAGGATG
LOC_Os03g26070
OsAffx.25230.1.S1_at--585--6331Chr03:14916592..14916616 (25 bp)
GATGCAGCTGCAGGATTATCGCCGC
LOC_Os03g26070
OsAffx.25230.1.S1_at--384--1991Chr03:14916656..14916680 (25 bp)
ACTGCGGCGGCGAGTAGATCTCAGA
LOC_Os03g26070
OsAffx.25230.1.S1_at--58--1271Chr03:14916671..14916695 (25 bp)
AGATCTCAGAGTATTATTCCGTTTG
LOC_Os03g26070
OsAffx.25230.1.S1_at--345--10351Chr03:14916684..14916708 (25 bp)
TTATTCCGTTTGTGAACCTCGTCGA
LOC_Os03g26070
Target Sequence 
AGGCGGCGCAGAGCCTCTTCATGATCCCGCCGTCGCTGCTGCCCTCGTCGTCGTCGTCATCGTCGGCGGCGGCGGTGGGT
ACGCAACTACGACCACCTCCGCCGCCGCCGCTGCTGCCGTCTCACGTGGCCGGCGTGCGCTACGGCCACCAACAACAACA
ACAACAACAACAATACGCTATTACTTGCATCAAACAGCAGCAGCAGCAGCAGCCAAGCTTATTTCCAACGTCAGATCAAT
CAGGATGCTTCAGGCAAGAGCTATACAGGATGCAGCTGCAGGATTATCGCCGCCGTCGAGCGCAGCCGCAGATGGAGCTG
CACGGCGAGACGACTGCGGCGGCGAGTAGATCTCAGAGTATTATTCCGTTTGTGAACCTCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis