Browse Element(s) Details


OsAffx.25243.2.S1_at

Description tigr:9631.m02625
TID=OsAffx.25243.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2668011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26720OsAffx.25241.1.S1_at11/113+15230246..15230785hypothetical protein
LOC_Os03g26730NANA3+15233882..15234925hypothetical protein
LOC_Os03g26750NANA3+15238581..15245144retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25243.2.S1_at--89--8711Chr03:15214746..15214770 (25 bp)
TGTCAGCAGCAACGGCCTTAGGTAT
LOC_Os03g26680
OsAffx.25243.2.S1_at--823--5051Chr03:15214741..15214765 (25 bp)
GCAGCAACGGCCTTAGGTATGTCAA
LOC_Os03g26680
OsAffx.25243.2.S1_at--459--10091Chr03:15214728..15214752 (25 bp)
TAGGTATGTCAAGGTGCGCGCACAC
LOC_Os03g26680
OsAffx.25243.2.S1_at--978--1031Chr03:15214717..15214741 (25 bp)
AGGTGCGCGCACACAGGCAACAGCA
LOC_Os03g26680
OsAffx.25243.2.S1_at--632--931Chr03:15214703..15214727 (25 bp)
AGGCAACAGCACTGCCCGAGCAAAT
LOC_Os03g26680
OsAffx.25243.2.S1_at--879--3311Chr03:15214694..15214718 (25 bp)
CACTGCCCGAGCAAATCGCCGGTAG
LOC_Os03g26680
OsAffx.25243.2.S1_at--713--1051Chr03:15214519..15214543 (25 bp)
AGGTGGTGGAGTTCCCTCTCATTGA
LOC_Os03g26680
OsAffx.25243.2.S1_at--290--9511Chr03:15214503..15214527 (25 bp)
TCTCATTGACCCGTTCGATGGTAAC
LOC_Os03g26680
OsAffx.25243.2.S1_at--485--6251Chr03:15214487..15214511 (25 bp)
GATGGTAACATCGTCTACTTCTGTA
LOC_Os03g26680
OsAffx.25243.2.S1_at--767--2491Chr03:15214481..15214505 (25 bp)
AACATCGTCTACTTCTGTATCAATG
LOC_Os03g26680
OsAffx.25243.2.S1_at--389--7151Chr03:15214475..15214499 (25 bp)
GTCTACTTCTGTATCAATGAAGGCA
LOC_Os03g26680
Target Sequence 
TGTCAGCAGCAACGGCCTTAGGTATGTCAAGGTGCGCGCACACAGGCAACAGCACTGCCCGAGCAAATCGCCGGTAGCAC
CCCCGCCTCTCTGCGACGATTGTCGGGCCGGCCCTGTCACGTCCTCGGTCCTGTACGACCACAGCGGTGCATGGGCAGAG
GAGCGCATGCTCAAGCTTGCAGATGTCTGGAGGGACGAGAGCTACCGATCCACGGGTCTACCGAAGGAGGTGGTGGAGTT
CCCTCTCATTGACCCGTTCGATGGTAACATCGTCTACTTCTGTATCAATGAAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25243.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis