Browse Element(s) Details


OsAffx.25270.3.S1_x_at

Description tigr:9631.m02813
TID=OsAffx.25270.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2891011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28370NANA3+16325192..16330480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g28380NANA3+16331869..16334241hypothetical protein
LOC_Os03g28390NANA3+16337530..16338018hypothetical protein
LOC_Os03g28400Os.3933.1.S1_a_at11/113+16338234..16341046Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os03g28910OsAffx.25270.3.S1_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28910OsAffx.25270.3.S1_x_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28920OsAffx.3356.1.S1_at11/113+16355344..16355721hypothetical protein
LOC_Os03g28930Os.38884.2.S1_x_at10/113+16357275..16360869transposon protein, putative, Mutator sub-class
LOC_Os03g28940Os.4695.1.S1_s_at11/113+16362456..16364801ZIM motif family protein, expressed
LOC_Os03g28950OsAffx.17052.1.S1_at9/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.17052.2.S1_at3/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.25414.1.S1_at1/113+16371414..16372751AC transposase, putative
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25270.3.S1_x_at--1038--4251Chr03:16352501..16352525 (25 bp)
CCGGTGCGCTGGTCTATTCGCTGGA
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--456--892Chr03:16352417..16352441 (25 bp)
AGGCCGAGATGGACCTCGACTTCAA
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--323--3831Chr03:16352312..16352336 (25 bp)
CTGCGCCCGTCATGGCAACGCAGTT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--720--871Chr03:16352235..16352259 (25 bp)
ATGGCCGCGGCCTGTGGCGATTCTT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--384--3731Chr03:16352187..16352211 (25 bp)
CTACAGCGGCCGTGGCCACAGGGAT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--669--7551Chr03:16352176..16352200 (25 bp)
GTGGCCACAGGGATGCGGCACTCCT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--285--431Chr03:16352086..16352110 (25 bp)
ATCTTCACCTCCATTAAACTTCTCT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--397--8431Chr03:16352056..16352080 (25 bp)
GGCCTCTCAACGCTTGAAGCTACTG
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--1160--9511Chr03:16352052..16352076 (25 bp)
TCTCAACGCTTGAAGCTACTGCCGT
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--699--2591Chr03:16352048..16352072 (25 bp)
AACGCTTGAAGCTACTGCCGTTGCC
LOC_Os03g28910
OsAffx.25270.3.S1_x_at--760--5391Chr03:16352041..16352065 (25 bp)
GAAGCTACTGCCGTTGCCGCTTCAA
LOC_Os03g28910
Target Sequence 
CCGGTGCGCTGGTCTATTCGCTGGAGGAGGAGGAGGGGTCGCTGTCCATCGTCGTGGAGGCCGGTGGCAGCGTGGCGTTC
ATGGAGGCCGAGATGGACCTCGACTTCAAGAGGCTCGTCGACGAAAGGGAGGAGCACGATGAGGACGCGCTGCGGCAGCT
CATCCCGGACATCCGTGGGGATGAGCTCCCTGCGCCCGTCATGGCAACGCAGTTGATGGAGTTCGTCGGCGGTGGCGGGG
GCGTGCGGTGCACCACGCGGCGGTGGATGGCCGCGGCCTGTGGCGATTCTTGGAGATGTGGTCCCCCTCCGCCGCTACAG
CGGCCGTGGCCACAGGGATGCGGCACTCCTCCCTCCTCGGCGTGTCCCACCCCTTCAGCTCCTCCTCCATCGCCGCCACC
TCCTCACCGTGCTCCATCTTCACCTCCATTAAACTTCTCTCCTCCGGCCTCTCAACGCTTGAAGCTACTGCCGTTGCCGC
TTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25270.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis