Browse Element(s) Details


OsAffx.2534.1.S1_at

Description tigr:9630.m00660
TID=OsAffx.2534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0719011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07130OsAffx.2532.1.S1_at10/112+3669874..3670702hypothetical protein
LOC_Os02g07140OsAffx.2533.1.S1_at11/112+3673312..3673617hypothetical protein
LOC_Os02g07150Os.54746.1.S1_at11/112+3674672..3677959Urease accessory protein F, putative, expressed
LOC_Os02g07160Os.11995.1.S1_at10/112+3677463..36799484-hydroxyphenylpyruvate dioxygenase, putative, expressed
LOC_Os02g07170Os.55501.1.S1_at11/112+3682189..3684123myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g07180Os.54315.1.S1_at11/112+3687916..3691301expressed protein
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2534.1.S1_at--839--1451Chr02:3698008..3698032 (25 bp)
AGAAGGCTAGTTCTGCTGCCCTTAA
LOC_Os02g07190
OsAffx.2534.1.S1_at--912--4731Chr02:3698036..3698060 (25 bp)
GCTGAGTGAACTAGTCTGCCTTAAC
LOC_Os02g07190
OsAffx.2534.1.S1_at--158--2111Chr02:3698295..3698319 (25 bp)
ACATCCTCTAGCAGCTGTCATGTTA
LOC_Os02g07190
OsAffx.2534.1.S1_at--606--8731Chr02:3698310..3698334 (25 bp)
TGTCATGTTACTCCAGCTTGATCTC
LOC_Os02g07190
OsAffx.2534.1.S1_at--1064--8031Chr02:3698426..3698450 (25 bp)
GGAGATTCTTCGCAGTACAGCGTTT
LOC_Os02g07190
OsAffx.2534.1.S1_at--1021--3391Chr02:3698481..3698505 (25 bp)
CAGCTTTGGAGCATGGTTCACACAG
LOC_Os02g07190
OsAffx.2534.1.S1_at--637--2751Chr02:3698517..3698541 (25 bp)
AAGAACAGTGTGCTCGAGCTCTCTT
LOC_Os02g07190
OsAffx.2534.1.S1_at--133--5911Chr02:3698532..3698556 (25 bp)
GAGCTCTCTTACTCTTGGCAGGGAG
LOC_Os02g07190
OsAffx.2534.1.S1_at--162--2631Chr02:3698574..3698598 (25 bp)
AACCGATCGCGGAAGCATGGCTACT
LOC_Os02g07190
OsAffx.2534.1.S1_at--592--8111Chr02:3698609..3698633 (25 bp)
GGACTAGATGACTCCCTATCCGAAT
LOC_Os02g07190
OsAffx.2534.1.S1_at--196--2891Chr02:3698671..3698695 (25 bp)
AAGGGTGGTACGTTCTCATGCTAAA
LOC_Os02g07190
Target Sequence 
AGAAGGCTAGTTCTGCTGCCCTTAACTTGCTGAGTGAACTAGTCTGCCTTAACAGAACAACCCAGATTTTGGAGTTCCTC
AAGGAGCTGAAAAATGGTGGCTGCTTGAATACAATGCATATTCTATTGGTCTATCTCCAACAAGCTCCTATTGCCCAACA
TCCTCTAGCAGCTGTCATGTTACTCCAGCTTGATCTCCTGGGAGATTCTTCGCAGTACAGCGTTTACAGAGAGGAAGCGA
TTGATGCCATGGTAGCAGCTTTGGAGCATGGTTCACACAGCAGAAAGTTGCAAGAACAGTGTGCTCGAGCTCTCTTACTC
TTGGCAGGGAGGTTTTCATCCTCAGGGGAACCGATCGCGGAAGCATGGCTACTAAAGAGAGCGGGACTAGATGACTCCCT
ATCCGAATCCTTCCGGAGAACAGAGATATTCAAAGATAAGAGTGCAAGGGTGGTACGTTCTCATGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis