Browse Element(s) Details


OsAffx.2542.1.S1_at

Description tigr:9630.m00725
TID=OsAffx.2542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC002342 Dreg-2 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g077309/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07680Os.5129.2.S1_a_at11/112+3995977..4006874Cytochrome P450 97B2, putative, expressed
LOC_Os02g07690OsAffx.24153.1.S1_s_at11/112+4008988..4010133VQ motif family protein, expressed
LOC_Os02g07700Os.55302.1.S1_at11/112+4014560..4015310expressed protein
LOC_Os02g07710OsAffx.2540.1.S1_at9/112+4015960..4023036expressed protein
LOC_Os02g07720Os.18588.1.S1_at11/112+4024688..4028680Choline-phosphate cytidylyltransferase B, putative, expressed
LOC_Os02g07730Os.50559.1.S1_at11/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07730OsAffx.2542.1.S1_at9/112+4030931..4033569haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g07740Os.22794.1.A1_at11/112+4034219..4038403expressed protein
LOC_Os02g07750Os.7332.1.S1_at11/112+4038442..4042354LEM3 family/CDC50 family protein, expressed
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2542.1.S1_at--1037--1991NONE
ACTCTTTCATCAGGGCTGGGTATGA
NONE
OsAffx.2542.1.S1_at--495--9651Chr02:4032787..4032811 (25 bp)
TCAGACGGATTTACTCCACTTTCGG
LOC_Os02g07730
OsAffx.2542.1.S1_at--563--171Chr02:4032795..4032819 (25 bp)
ATTTACTCCACTTTCGGTTCCTCTG
LOC_Os02g07730
OsAffx.2542.1.S1_at--528--3731Chr02:4032824..4032848 (25 bp)
CTACTCGGTGTTCCCTGATGCTCAA
LOC_Os02g07730
OsAffx.2542.1.S1_at--857--2231Chr02:4032848..4032872 (25 bp)
ACAATTCCTGAGATGGCTGCGCAAC
LOC_Os02g07730
OsAffx.2542.1.S1_at--774--6231Chr02:4032859..4032883 (25 bp)
GATGGCTGCGCAACAATGGCTGCAC
LOC_Os02g07730
OsAffx.2542.1.S1_at--572--9031Chr02:4032879..4032903 (25 bp)
TGCACCGTCGGTATCGTCAGCAACG
LOC_Os02g07730
OsAffx.2542.1.S1_at--1111--1471Chr02:4032897..4032921 (25 bp)
AGCAACGCCGAGTACCGGTACAAGG
LOC_Os02g07730
OsAffx.2542.1.S1_at--767--8091Chr02:4032920..4032944 (25 bp)
GGACGTCGTCCTACCTGCACTTGGT
LOC_Os02g07730
OsAffx.2542.1.S1_at--656--9971Chr02:4032931..4032954 (24 bp)
TACCTGCACTTGGTCTCAATGAGGG
LOC_Os02g07730
OsAffx.2542.1.S1_at--110--4371NONE
CCACACAAAAATGGCGGCCCGATAG
NONE
Target Sequence 
ACTCTTTCATCAGGGCTGGGTATGAGTATGATGATGCCACATTTGAGAAAATATTCAGACGGATTTACTCCACTTTCGGT
TCCTCTGCACCCTACTCGGTGTTCCCTGATGCTCAACAATTCCTGAGATGGCTGCGCAACAATGGCTGCACCGTCGGTAT
CGTCAGCAACGCCGAGTACCGGTACAAGGACGTCGTCCTACCTGCACTTGGTCTCAATGAGGGGTCGGAGTGGGATTTCG
GGGTGTTCTCGGGGATCGTGGGCGTGGAGAAGCCGGACAGGAGGATGTACGAGGCGGCGCTGGAGATGGCCGGCGGCGTG
GCGGCGGCGGAGGCTCTGCACATCGGCGACAGCATGCGCAAGGACTACGCGCCGGCGCGGCGGGCCGGGATGCACGCGCT
GCTGCTGGACAGGCTCCCGACGGGCCGAGGCGGAGGGCTGGTGCGCGTCCCGCGCCGCCGTGCTCCCCGACCTCCGCCCC
CTCCCGGGAATAGCGTCACCCCCGCCGCAGCCCCACACAAAAATGGCGGCCCGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis