Browse Element(s) Details


OsAffx.2543.1.S1_at

Description tigr:9630.m00747
TID=OsAffx.2543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=fiber protein Fb15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0791011/11fiber protein Fb15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07860OsAffx.24156.1.S1_at11/112+4117565..4118962hypothetical protein
LOC_Os02g07860OsAffx.24156.2.S1_at1/112+4117565..4118962hypothetical protein
LOC_Os02g07870Os.47485.1.S1_at11/112+4120170..4127530Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os02g07880Os.9124.1.S1_at11/112+4129132..4133816expressed protein
LOC_Os02g07890Os.11533.1.S1_at11/112+4134900..4135625expressed protein
LOC_Os02g07900Os.6353.1.S1_at11/112+4135894..4140379Clathrin assembly protein, putative, expressed
LOC_Os02g07910OsAffx.2543.1.S1_at11/112+4141503..4142223fiber protein Fb15, putative, expressed
LOC_Os02g07920Os.47930.1.S1_at10/112+4144355..4147007expressed protein
LOC_Os02g07930OsAffx.24157.1.S1_s_at11/112+4149963..4151231B-box zinc finger family protein, expressed
LOC_Os02g07940NANA2+4157105..4158502retrotransposon protein, putative, unclassified
LOC_Os02g07950NANA2+4159538..4160221retrotransposon protein, putative, unclassified
LOC_Os02g07960Os.38295.1.S3_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S2_at11/112+4165204..4175209Leucine Rich Repeat family protein, expressed
LOC_Os02g07960Os.38295.1.S1_at10/112+4165204..4175209Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2543.1.S1_at--429--6371Chr02:4141879..4141903 (25 bp)
GATCCGAGGTCAGGTGAGGGTTCCC
LOC_Os02g07910
OsAffx.2543.1.S1_at--395--6411Chr02:4141923..4141947 (25 bp)
GATCTGATCTGGGATTTTCCCCGAT
LOC_Os02g07910
OsAffx.2543.1.S1_at--1147--6391Chr02:4141928..4141952 (25 bp)
GATCTGGGATTTTCCCCGATTGTTT
LOC_Os02g07910
OsAffx.2543.1.S1_at--456--4031Chr02:4141944..4141968 (25 bp)
CGATTGTTTCGTTCGGTGCCGTTGG
LOC_Os02g07910
OsAffx.2543.1.S1_at--883--4231Chr02:4141962..4141986 (25 bp)
CCGTTGGGATGGTTAGATTGGAAAT
LOC_Os02g07910
OsAffx.2543.1.S1_at--858--6591Chr02:4141977..4142001 (25 bp)
GATTGGAAATGTTAGCTATGGAGAT
LOC_Os02g07910
OsAffx.2543.1.S1_at--110--6171Chr02:4142004..4142028 (25 bp)
GAGGAAATGTTTCTATTCTTAAAAT
LOC_Os02g07910
OsAffx.2543.1.S1_at--817--9511Chr02:4142020..4142044 (25 bp)
TCTTAAAATCTATCACGAGTGGTTG
LOC_Os02g07910
OsAffx.2543.1.S1_at--414--3011Chr02:4142058..4142082 (25 bp)
AATGCATTTCAATCACGGTGCAGGA
LOC_Os02g07910
OsAffx.2543.1.S1_at--1107--1051Chr02:4142084..4142108 (25 bp)
AGGGATCTGGATTATTATAGGGAAA
LOC_Os02g07910
OsAffx.2543.1.S1_at--462--3711Chr02:4142118..4142142 (25 bp)
CTAGCTTTTCAGGAGTAAGTTTAAT
LOC_Os02g07910
Target Sequence 
GATCCGAGGTCAGGTGAGGGTTCCCCCGTCTCCTTGCCTCCCCTGATCTGATCTGGGATTTTCCCCGATTGTTTCGTTCG
GTGCCGTTGGGATGGTTAGATTGGAAATGTTAGCTATGGAGATATGAGGAAATGTTTCTATTCTTAAAATCTATCACGAG
TGGTTGGGGATTTTTTTTTAATGCATTTCAATCACGGTGCAGGAGAGGGATCTGGATTATTATAGGGAAAAAAGTGATAC
TAGCTTTTCAGGAGTAAGTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis