Browse Element(s) Details


OsAffx.25511.1.S1_at

Description tigr:9631.m04177
TID=OsAffx.25511.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4335011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43309OsAffx.28736.2.S1_at10/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.31510.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309Os.36476.1.S1_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43309OsAffx.27681.1.S1_x_at1/113+24097420..24099895hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_x_at9/113+24108594..24111062hypothetical protein
LOC_Os03g43330OsAffx.13387.3.S1_at8/113+24108594..24111062hypothetical protein
LOC_Os03g43340OsAffx.22604.1.S1_x_at2/113+24114851..24116388hypothetical protein
LOC_Os03g43350OsAffx.25511.1.S1_at11/113+24123273..24125821hypothetical protein
LOC_Os03g43360OsAffx.13323.1.S1_at11/113+24128721..24134539Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g43374NANA3+24138620..24139265retrotransposon protein, putative, unclassified
LOC_Os03g43390Os.9883.2.S1_at11/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390Os.9883.1.A1_at10/113+24144016..24151596Leucine Rich Repeat family protein, expressed
LOC_Os03g43390OsAffx.7847.1.S1_at1/113+24144016..24151596Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25511.1.S1_at--223--5811Chr03:24123764..24123788 (25 bp)
GACCCAGTATACTTCCAGATCGGCA
LOC_Os03g43350
OsAffx.25511.1.S1_at--858--1271Chr03:24123748..24123772 (25 bp)
AGATCGGCAGTAGGCTCTTCACGCT
LOC_Os03g43350
OsAffx.25511.1.S1_at--365--4711Chr03:24123681..24123705 (25 bp)
GCTGGATGGCGACCCTAGAAGTACA
LOC_Os03g43350
OsAffx.25511.1.S1_at--448--5051Chr03:24123651..24123675 (25 bp)
GCAGCAATGGTCATGGCGCGATCTC
LOC_Os03g43350
OsAffx.25511.1.S1_at--304--1751Chr03:24123515..24123539 (25 bp)
ACCTACAGCTTTCGCATTGCGGAGG
LOC_Os03g43350
OsAffx.25511.1.S1_at--342--5911Chr03:24123486..24123510 (25 bp)
GAGCTCAGCCTGGAAATGCCTTGGT
LOC_Os03g43350
OsAffx.25511.1.S1_at--261--4651Chr03:24123436..24123460 (25 bp)
GCGGTTACTTTGACCCTAAGCTGAA
LOC_Os03g43350
OsAffx.25511.1.S1_at--434--9011Chr03:24123415..24123439 (25 bp)
TGAATGCCATGATCGGGCTCTCGAT
LOC_Os03g43350
OsAffx.25511.1.S1_at--702--4791Chr03:24123376..24123400 (25 bp)
GCTCCGGCCAATTGGTGTCTGATCA
LOC_Os03g43350
OsAffx.25511.1.S1_at--134--6451Chr03:24123356..24123380 (25 bp)
GATCACTGCCCGGACGTGAAGTATT
LOC_Os03g43350
OsAffx.25511.1.S1_at--764--5951Chr03:24123326..24123350 (25 bp)
GAGAATCTGTTCAGCCGAGACGCGC
LOC_Os03g43350
Target Sequence 
GACCCAGTATACTTCCAGATCGGCAGTAGGCTCTTCACGCTAGGGTGCTCCCGCTTCCAGCTCCTTGACCTACTGCCGCT
GGCGCTGGATGGCGACCCTAGAAGTACAAGGCGGCAGCAATGGTCATGGCGCGATCTCCCGATGCCGCCCTTCCTCCACT
CCATGCGTGCTCTCTCTCACGTGCTTCTCCCTCAAGAAGACCAGACCATCCTCGTCGGCGTTGGGTTCCTCTCCCCAAGT
TCTTCCTCCACCTACAGCTTTCGCATTGCGGAGGACGGGAGCTCAGCCTGGAAATGCCTTGGTAACTGGGGGCTGCCTTT
CCATGGCCGCGGTTACTTTGACCCTAAGCTGAATGCCATGATCGGGCTCTCGATGGATGGACGCATCTGCTCCGGCCAAT
TGGTGTCTGATCACTGCCCGGACGTGAAGTATTGCAGGGAGAATCTGTTCAGCCGAGACGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis