Browse Element(s) Details


OsAffx.25575.1.S1_at

Description tigr:9631.m04487
TID=OsAffx.25575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4625011/11acetyltransferase, GNAT family protein, expressed
LOC_Os08g435701/11Glycosyl hydrolases family 35 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46220NANA3+26082364..26088141retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.27141.1.S1_at11/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.57365.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_at10/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230OsAffx.28452.1.S1_x_at9/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46230Os.28943.1.S1_x_at4/113+26088766..26092032retrotransposon protein, putative, unclassified
LOC_Os03g46240OsAffx.13379.1.S1_at11/113+26098221..26098454hypothetical protein
LOC_Os03g46250OsAffx.25575.1.S1_at11/113+26101813..26102757acetyltransferase, GNAT family protein, expressed
LOC_Os03g46260Os.7531.1.S1_at10/113+26106267..26109634expressed protein
LOC_Os03g46270Os.46314.3.S1_at2/113+26124655..26128916transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004565molecular_functionbeta-galactosidase activity
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25575.1.S1_at--465--411Chr03:26101996..26102020 (25 bp)
ATCAGGGACACGGTGCTGGGCCACC
LOC_Os03g46250
OsAffx.25575.1.S1_at--459--4431Chr03:26102182..26102419 (25 bp)
GCCATCACAATGCTAACCGCTAAAT
LOC_Os03g46250
OsAffx.25575.1.S1_at--353--2611Chr03:26102409..26102433 (25 bp)
AACCGCTAAATGCATTAACCCGCTA
LOC_Os03g46250
OsAffx.25575.1.S1_at--362--4933Chr11:19104684..19105115 (25 bp)
GCATTAACCCGCTATTTAAAACATT
NONE
OsAffx.25575.1.S1_at--863--4872Chr06:26172621..26172656 (25 bp)
GCTATTTAAAACATTGGTCACCGTC
NONE
OsAffx.25575.1.S1_at--309--31Chr03:26102442..26102466 (25 bp)
ATTGGTCACCGTCGATCGCCGTGTC
LOC_Os03g46250
OsAffx.25575.1.S1_at--350--8371Chr03:26102608..26102632 (25 bp)
GGCGTGCTGCGCAGGTACATCGTCC
LOC_Os03g46250
OsAffx.25575.1.S1_at--775--9151Chr03:26102615..26102639 (25 bp)
TGCGCAGGTACATCGTCCGCCGGAG
LOC_Os03g46250
OsAffx.25575.1.S1_at--976--8871Chr03:26102648..26102672 (25 bp)
TGATGGACGCCGTCATCTACAGCTT
LOC_Os03g46250
OsAffx.25575.1.S1_at--363--9611Chr03:26102660..26102684 (25 bp)
TCATCTACAGCTTCTTGGCGTCCGA
LOC_Os03g46250
OsAffx.25575.1.S1_at--436--1551Chr03:26102668..26102692 (25 bp)
AGCTTCTTGGCGTCCGATCGACCGT
LOC_Os03g46250
Target Sequence 
ATCAGGGACACGGTGCTGGGCCACCCGTGGTTCCGCGCCATCTGCGTCGACGACGACGACGCCGGCGCCGGCCGCCGCCC
CGTCGGCCAGGTCTCCGTCTGGCCGTACGCCGACGAGGGCGGCCACAGGGCCAACCTCGGCTACGCCCTGTCGCACGGCC
TCTGGGGCCGAGGCATCGCCACCGCCGCCATCACAATGCTAACCGCTAAATGCATTAACCCGCTATTTAAAACATTGGTC
ACCGTCGATCGCCGTGTCCACGCACGGCGGCGGCCCGGGATGCAGGTGGTGGCGAGGGTGTTCGACGAGCTGCCGGGGCT
GGAGCGGCTGGAGGCGGTGACGGACGTGGAGAACGTGCGGTCGCAGAGGGCGCTCGAGAAGGCCGGGTTCAGGAAGGAGG
GCGTGCTGCGCAGGTACATCGTCCGCCGGAGCGGCGAGGTGATGGACGCCGTCATCTACAGCTTCTTGGCGTCCGATCGA
CCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis