Browse Element(s) Details

OsAffx.25583.1.S1_at

Description

tigr:9631.m04530
TID=OsAffx.25583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=guanine nucleotide-binding protein beta subunit
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g46650	11/11	Guanine nucleotide-binding protein beta subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g46590	Os.14919.1.S1_at	3/11	3	+	26320324..26324849	transposon protein, putative, Mutator sub-class
LOC_Os03g46590	OsAffx.29313.1.S1_at	1/11	3	+	26320324..26324849	transposon protein, putative, Mutator sub-class
LOC_Os03g46590	Os.56216.1.S1_at	1/11	3	+	26320324..26324849	transposon protein, putative, Mutator sub-class
LOC_Os03g46600	Os.55587.1.S1_at	11/11	3	+	26326865..26329081	Leucine Rich Repeat family protein, expressed
LOC_Os03g46610	Os.53765.1.S1_at	11/11	3	+	26329923..26334668	ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610	Os.5421.1.S1_at	11/11	3	+	26329923..26334668	ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46610	Os.5421.1.S1_s_at	11/11	3	+	26329923..26334668	ATP-dependent RNA helicase DDX47, putative, expressed
LOC_Os03g46620	Os.38764.1.S1_x_at	5/11	3	+	26337086..26338310	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620	Os.10731.1.A1_a_at	2/11	3	+	26337086..26338310	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46620	Os.45173.1.S1_x_at	2/11	3	+	26337086..26338310	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46630	NA	NA	3	+	26341863..26343734	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46640	Os.8039.1.S1_at	11/11	3	+	26345472..26346656	Deoxyuridine 5'-triphosphate nucleotidohydrolase, putative, expressed
LOC_Os03g46650	Os.10.1.S1_s_at	11/11	3	+	26347808..26355758	Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46650	OsAffx.25583.1.S1_at	11/11	3	+	26347808..26355758	Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os03g46660	Os.21574.1.S1_a_at	11/11	3	+	26356927..26359742	Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g46674	NA	NA	3	+	26367389..26368943	transposon protein, putative, unclassified
LOC_Os03g46690	OsAffx.3534.1.S1_at	11/11	3	+	26374411..26376763	F-box domain containing protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006800	biological_process	oxygen and reactive oxygen species metabolism
GO:0009887	biological_process	organ morphogenesis
GO:0010154	biological_process	fruit development
GO:0042831	biological_process	defense response to pathogenic fungi
GO:0005834	cellular_component	heterotrimeric G-protein complex
GO:0030126	cellular_component	COPI vesicle coat
GO:0000166	molecular_function	nucleotide binding
GO:0003924	molecular_function	GTPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.25583.1.S1_at--178--35	1	Chr03:26349555..26349579 (25 bp)	ATAATGAACTCCCAACTGTTACATC	LOC_Os03g46650
OsAffx.25583.1.S1_at--465--301	1	Chr03:26349553..26349577 (25 bp)	AATGAACTCCCAACTGTTACATCTA	LOC_Os03g46650
OsAffx.25583.1.S1_at--722--67	1	Chr03:26349552..26349576 (25 bp)	ATGAACTCCCAACTGTTACATCTAT	LOC_Os03g46650
OsAffx.25583.1.S1_at--854--545	1	Chr03:26349550..26349574 (25 bp)	GAACTCCCAACTGTTACATCTATTG	LOC_Os03g46650
OsAffx.25583.1.S1_at--1027--199	1	Chr03:26349548..26349572 (25 bp)	ACTCCCAACTGTTACATCTATTGCA	LOC_Os03g46650
OsAffx.25583.1.S1_at--840--209	1	Chr03:26349535..26349559 (25 bp)	ACATCTATTGCATTTTCGATATCAG	LOC_Os03g46650
OsAffx.25583.1.S1_at--15--45	1	Chr03:26349533..26349557 (25 bp)	ATCTATTGCATTTTCGATATCAGGA	LOC_Os03g46650
OsAffx.25583.1.S1_at--338--369	1	Chr03:26349531..26349555 (25 bp)	CTATTGCATTTTCGATATCAGGAAG	LOC_Os03g46650
OsAffx.25583.1.S1_at--774--15	1	Chr03:26349524..26349548 (25 bp)	ATTTTCGATATCAGGAAGGCTTCTT	LOC_Os03g46650
OsAffx.25583.1.S1_at--438--1029	1	Chr03:26349522..26349546 (25 bp)	TTTCGATATCAGGAAGGCTTCTTTT	LOC_Os03g46650
OsAffx.25583.1.S1_at--275--405	1	Chr03:26349519..26349543 (25 bp)	CGATATCAGGAAGGCTTCTTTTTGC	LOC_Os03g46650

Target Sequence

ATAATGAACTCCCAACTGTTACATCTATTGCATTTTCGATATCAGGAAGGCTTCTTTTTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis