Browse Element(s) Details


OsAffx.25587.1.S1_at

Description tigr:9631.m04550
TID=OsAffx.25587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4684011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46800NANA3+26420988..26423339retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g46810NANA3+26423976..26425551retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46820NANA3+26425664..26426578hypothetical protein
LOC_Os03g46830Os.35344.18.S1_x_at11/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830Os.35344.3.S1_x_at9/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46830OsAffx.22940.5.S1_x_at3/113+26437243..26443290transposon protein, putative, Mutator sub-class
LOC_Os03g46840OsAffx.25587.1.S1_at11/113+26447848..26449344hypothetical protein
LOC_Os03g46850OsAffx.3536.1.S1_at11/113+26452340..26453678hypothetical protein
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25587.1.S1_at--955--7331Chr03:26447888..26447912 (25 bp)
GTGCAGGCAACTGTGACATGCCAAA
LOC_Os03g46840
OsAffx.25587.1.S1_at--914--3291Chr03:26447909..26447933 (25 bp)
CAAATGAGGATGTCGGCTGTGAGCA
LOC_Os03g46840
OsAffx.25587.1.S1_at--1025--5691Chr03:26448049..26448073 (25 bp)
GACTCAAAAGCTCCACCTTACAATG
LOC_Os03g46840
OsAffx.25587.1.S1_at--707--6551Chr03:26448338..26448359 (22 bp)
GATTATGCAAGGCTTCTCGGTATAA
LOC_Os03g46840
OsAffx.25587.1.S1_at--277--6471Chr03:26448965..26448989 (25 bp)
GATACCACAAGAACGTGTTTCTGCT
LOC_Os03g46840
OsAffx.25587.1.S1_at--768--8771Chr03:26448980..26449004 (25 bp)
TGTTTCTGCTAGAGGACACCGCAAA
LOC_Os03g46840
OsAffx.25587.1.S1_at--915--10691Chr03:26449171..26449195 (25 bp)
TTGCTCCCGTGCCATGGTCGAAAGG
LOC_Os03g46840
OsAffx.25587.1.S1_at--520--2671Chr03:26449209..26449233 (25 bp)
AAGCCCTGCTATGCCGCTAGAGCAA
LOC_Os03g46840
OsAffx.25587.1.S1_at--80--6031Chr03:26449235..26449259 (25 bp)
GAGATGGCCAACGTTACCACTATCC
LOC_Os03g46840
OsAffx.25587.1.S1_at--954--2031Chr03:26449253..26449277 (25 bp)
ACTATCCCGGAGTCGCATGGAGTCG
LOC_Os03g46840
OsAffx.25587.1.S1_at--46--4631Chr03:26449280..26449304 (25 bp)
GCGAGGAGGAAGAGCCATCCACGCT
LOC_Os03g46840
Target Sequence 
GTGCAGGCAACTGTGACATGCCAAATGAGGATGTCGGCTGTGAGCAAGAGGACCAAACATGTGTCGATCACAGTGAAGCT
AATCTAGATCAGATGATGCGCGACGGGGAGAAGGCTGACACTGATGATAGGAAATATCGCATGTTCAAAACCATGGTGGA
GGACTCAAAAGCTCCACCTTACAATGGATTATGCAAGGCTTCTCGGTATAATTGTGGAGACAGGGATGATGACGGTGGAA
GCAATAGTACAATGAAGAAGAAAAGAGTTCCAATGAAGAGGATACCACAAGAACGTGTTTCTGCTAGAGGACACCGCAAA
AAAAAGAGCACCTGCTTGCTCCCGTGCCATGGTCGAAAGGGGAAGGCTGACCCAAGCCCTGCTATGCCGCTAGAGCAAGG
AGATGGCCAACGTTACCACTATCCCGGAGTCGCATGGAGTCGGGGCGAGGAGGAAGAGCCATCCACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis