Browse Element(s) Details


OsAffx.2561.1.S1_at

Description tigr:9630.m00916
TID=OsAffx.2561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1000010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein
LOC_Os02g10010Os.4258.1.A1_at11/112+5207168..5208680expressed protein
LOC_Os02g10020Os.51068.1.S1_at11/112+5209231..5212359Mitotic spindle checkpoint component mad3, putative, expressed
LOC_Os02g10030OsAffx.24181.1.S1_at10/112+5216899..5218060hypothetical protein
LOC_Os02g10040OsAffx.11966.1.S1_x_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10040Os.17025.1.S1_at11/112+5220255..5221797guanine nucleotide-exchange protein, putative, expressed
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2561.1.S1_at--1140--1751Chr02:5204260..5204284 (25 bp)
ACCTGACGCGGGTGCAGACCTACGT
LOC_Os02g10000
OsAffx.2561.1.S1_at--954--4591Chr02:5204227..5204251 (25 bp)
GCGACAGGGTCGTCTTCCTCAACGA
LOC_Os02g10000
OsAffx.2561.1.S1_at--494--3771NONE
CTCGGCTGCAAGCTGAAATGCATGG
NONE
OsAffx.2561.1.S1_at--706--3011Chr02:5202470..5202494 (25 bp)
AATGCATGGAATCGGATCCTACCCT
LOC_Os02g10000
OsAffx.2561.1.S1_at--586--5251Chr02:5202462..5202486 (25 bp)
GAATCGGATCCTACCCTGACATTCA
LOC_Os02g10000
OsAffx.2561.1.S1_at--250--2091Chr02:5202422..5202446 (25 bp)
ACATCCCAGAGCCACAGATTTCAGG
LOC_Os02g10000
OsAffx.2561.1.S1_at--846--1251Chr02:5202407..5202431 (25 bp)
AGATTTCAGGGCCACAGGAAGACGA
LOC_Os02g10000
OsAffx.2561.1.S1_at--188--5371Chr02:5202363..5202387 (25 bp)
GAAGACGAGCCGTTCTACCCAACCA
LOC_Os02g10000
OsAffx.2561.1.S1_at--1015--10551Chr02:5202351..5202375 (25 bp)
TTCTACCCAACCAAGGCGAACGCTG
LOC_Os02g10000
OsAffx.2561.1.S1_at--425--3211Chr02:5202340..5202364 (25 bp)
CAAGGCGAACGCTGCTCAGAGCAAG
LOC_Os02g10000
OsAffx.2561.1.S1_at--153--3711Chr02:5202233..5202257 (25 bp)
CTAGAGGCGACAAGGAAGAGGATCA
LOC_Os02g10000
Target Sequence 
ACCTGACGCGGGTGCAGACCTACGTCATCAACCGCGACAGGGTCGTCTTCCTCAACGAGCGCCCGCAGGCGCCGCGCAAC
GGCCGGTGCGCCGCCGCCGCCGCCGTGGCGTGCGCCGCCTGCGAGGCGTGCGGCCGCGGCCTCCTCGACGTCGCCTTCCG
CTTCTGCTCCCTCGGCTGCAAGCTGAAATGCATGGAATCGGATCCTACCCTGACATTCACCATCGATCCCAACAACATCC
CAGAGCCACAGATTTCAGGGCCACAGGAAGACGAGGAAGAAGACGACGACGAAGAAGACGAGCCGTTCTACCCAACCAAG
GCGAACGCTGCTCAGAGCAAGGCCGCGGGCGGCGGCGGCTGCCGGCCGCCGCCGCCGCCGTCCGCGTCGTCGTCGCGACC
TAGGAGAGGAGGACGCCGGGTGGCTAGAGGCGACAAGGAAGAGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis