Browse Element(s) Details


OsAffx.25728.1.S1_at

Description tigr:9631.m05474
TID=OsAffx.25728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5603011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein
LOC_Os03g56020Os.55771.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56020OsAffx.13500.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56030OsAffx.25728.1.S1_at11/113+31836993..31839169hypothetical protein
LOC_Os03g56040Os.19099.1.S1_x_at1/113+31849671..31851842retrotransposon, putative, centromere-specific
LOC_Os03g56050OsAffx.25729.1.S1_at11/113+31861000..31866063AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25728.1.S1_at--554--5995Chr11:14570080..14570104 (25 bp)
GAGACTCCAGGTACAGCAGACGCGT
NONE
OsAffx.25728.1.S1_at--603--6194Chr09:18696877..18696901 (25 bp)
GAGGAATGCACCTGAGGGATGACAC
NONE
OsAffx.25728.1.S1_at--644--3911Chr03:31838773..31838797 (25 bp)
CTGGAGATGCTCTTACACGAGCCGC
LOC_Os03g56030
OsAffx.25728.1.S1_at--624--2171Chr03:31838762..31838783 (22 bp)
ACACGAGCCGCCTGCAGAGATGTCT
LOC_Os03g56030
OsAffx.25728.1.S1_at--689--6271Chr03:31838668..31838689 (22 bp)
GATGTCTGTCAGAACATGCACACAC
LOC_Os03g56030
OsAffx.25728.1.S1_at--366--9031Chr03:31838652..31838676 (25 bp)
TGCACACACCAGTACATGATGAGAG
LOC_Os03g56030
OsAffx.25728.1.S1_at--610--2591Chr03:31837929..31837953 (25 bp)
AAGCGAAACAGCTGCATGCAATGCA
LOC_Os03g56030
OsAffx.25728.1.S1_at--76--4991Chr03:31837916..31837940 (25 bp)
GCATGCAATGCACACCGGCGTCGTT
LOC_Os03g56030
OsAffx.25728.1.S1_at--514--1771Chr03:31837903..31837927 (25 bp)
ACCGGCGTCGTTTCTATGTGTGCAT
LOC_Os03g56030
OsAffx.25728.1.S1_at--192--791Chr03:31837888..31837912 (25 bp)
ATGTGTGCATAGTTTGTCCTGGCCT
LOC_Os03g56030
OsAffx.25728.1.S1_at--565--10791Chr03:31837875..31837899 (25 bp)
TTGTCCTGGCCTGGCCTCTTGTGGA
LOC_Os03g56030
Target Sequence 
GAGACTCCAGGTACAGCAGACGCGTCGGCCGGGAAGGAGCGTCGGGTAGAGGAATGCACCTGAGGGATGACACGGTAGGC
AGGGAGGAGCCGCACCAGCCGGGGATGAGCCCTGGGCAGGGGAGGTGCCGGCGGACCAAGACCACGTCGGGCGGCTCCCG
CGCTTTTCTAACTGTGGATGGGGGCTGTGCAGTAGAGCCCCTGAGACTGGGGGCTAGGAAAGGGGCTATATTTAGTGTCC
CTGCTGGAGATGCTCTTACACGAGCCGCCTGCAGAGATGTCTGTCAGAACATGCACACACCAGTACATGATGAGAGTATG
AAACCGATGGAGATTGCAAGCGAAACAGCTGCATGCAATGCACACCGGCGTCGTTTCTATGTGTGCATAGTTTGTCCTGG
CCTGGCCTCTTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25728.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis