Browse Element(s) Details


OsAffx.25736.1.S1_at

Description tigr:9631.m05530
TID=OsAffx.25736.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5651011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25736.1.S1_at--922--5651Chr03:32135845..32135869 (25 bp)
GACATTCACATTCTCGTCCAAGGAC
LOC_Os03g56510
OsAffx.25736.1.S1_at--849--6991Chr03:32135895..32135919 (25 bp)
GTACGATCCGCATGGACGCCGGCCA
LOC_Os03g56510
OsAffx.25736.1.S1_at--373--1611Chr03:32136001..32136025 (25 bp)
AGCGGTACTGGGAGCTCCAAGCCCA
LOC_Os03g56510
OsAffx.25736.1.S1_at--117--1951Chr03:32136025..32136049 (25 bp)
ACGGCGTGGTCATCTTCTCCCTGCG
LOC_Os03g56510
OsAffx.25736.1.S1_at--923--4791Chr03:32136091..32136115 (25 bp)
GCTCCGCCGACAAGATGCTGGGCTG
LOC_Os03g56510
OsAffx.25736.1.S1_at--245--9051Chr03:32136114..32136138 (25 bp)
TGCAGGAAGGACAGCCATCAGCTCA
LOC_Os03g56510
OsAffx.25736.1.S1_at--968--8831Chr03:32136274..32136298 (25 bp)
TGATCACGAGGCTGGCGATCGACCG
LOC_Os03g56510
OsAffx.25736.1.S1_at--238--4691Chr03:32136303..32136327 (25 bp)
GCGGAAGCCGCGAGAATGTACAGCA
LOC_Os03g56510
OsAffx.25736.1.S1_at--14--5291Chr03:32136316..32136340 (25 bp)
GAATGTACAGCAACGTCTTCTTCGA
LOC_Os03g56510
OsAffx.25736.1.S1_at--709--9091Chr03:32136367..32136391 (25 bp)
TGCTCTTGCGCTTGCATCGTTTTGG
LOC_Os03g56510
OsAffx.25736.1.S1_at--654--511Chr03:32136382..32136406 (25 bp)
ATCGTTTTGGGCTCGTGCAGCTCAA
LOC_Os03g56510
Target Sequence 
GACATTCACATTCTCGTCCAAGGACGGCGGCGGCGGATGGGGCGCCGCCCGTACGATCCGCATGGACGCCGGCCACCGGA
AGCCCTCCATCCCGATGCCGTTTCACCACGTTCCCGGCCGTCGTCGGGCGCGCCGTGCACTGGCTCGCCGGCACGGAGCG
GTACTGGGAGCTCCAAGCCCACGGCGTGGTCATCTTCTCCCTGCGCGTCGACGCGGCGTGCGCCGCGACGATGGAGCTAC
CGCCGGGCTCCGCCGACAAGATGCTGGGCTGCAGGAAGGACAGCCATCAGCTCATGCTCGCCGCGTCGCGGGGCGGCACG
GCGTTGAGCCTGGTCGTGGCGGAGCGCGAGCTGATCTCGGTGTGGACGTTGGAGGAAGAATCATCGGCGGCGGCGACGAC
AACGGCGGCGAGGTGGAGCCGGCAGGTGGTGATCACGAGGCTGGCGATCGACCGGAGCGCGGAAGCCGCGAGAATGTACA
GCAACGTCTTCTTCGAGGGGTTCGGGGAGAGGAGCGGTGTCGTGCTCTTGCGCTTGCATCGTTTTGGGCTCGTGCAGCTC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis