Browse Element(s) Details


OsAffx.25738.2.S1_x_at

Description tigr:9631.m05561
TID=OsAffx.25738.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5676011/11hypothetical protein
LOC_Os03g567101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25738.2.S1_x_at--153--5291Chr03:32278224..32278248 (25 bp)
GAATGTGCACAGCAGTTCCACATGT
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--661--10791Chr03:32278156..32278180 (25 bp)
TTGTTGAGCCAGTCGGCACTATCAT
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--675--5112Chr03:32278141..32278165 (25 bp)
GCACTATCATCTGGTACTGTCACAT
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--394--5691Chr03:32277969..32277993 (25 bp)
GACTTCGAAAGCATCGGCGTGCTGG
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--977--4691Chr03:32277872..32277896 (25 bp)
GCATGGCAAACGTGTACCTGGTGGA
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--153--4271Chr03:32277856..32277880 (25 bp)
CCTGGTGGAGTCCTTGGATGAACTT
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--403--5851Chr03:32277796..32277820 (25 bp)
GACCATCTACGATGTCACTGTTTAT
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--529--7551Chr03:32277725..32277749 (25 bp)
GTGGCCGTGCGTTCTTGACAGCTTC
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--540--3531Chr03:32277701..32277725 (25 bp)
CATGCTATTTTGGTGCTTCACGGTC
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--332--9771Chr03:32277622..32277646 (25 bp)
TAAGTATTACGAGGTATCCAAGGTG
LOC_Os03g56760
OsAffx.25738.2.S1_x_at--1133--6171Chr03:32277582..32277606 (25 bp)
GAGGAGCACGAGCTCATCGAAGCTC
LOC_Os03g56760
Target Sequence 
GAATGTGCACAGCAGTTCCACATGTCTGCTCTCCTGCAAGCCCACGATGCCTGGCTGTGTCGTTCTCCTTGTTGAGCCAG
TCGGCACTATCATCTGGTACTGTCACATTGGAGACGATGACAAGTGGGGCAAGTTCTACTTCAATGGTGACTTCGAAAGC
ATCGGCGTGCTGGAGTTCTCCCCCGAGCCAACATTCAGCTCCATCACAATCACCGACCCCATCATCGGAGGATTAGGGGT
GGTGGGCATGGCAAACGTGTACCTGGTGGAGTCCTTGGATGAACTTTACATGGTCTGCCAAATGTATGACTCTGAAATGG
AGACCATCTACGATGTCACTGTTTATAGGATGGATTTCTCGAAGCAGCAATGGTGCGTAGCCGAGGACATTGGTGGCCGT
GCGTTCTTGACAGCTTCATGCTATTTTGGTGCTTCACGGTCGGCTGATGAGTATGGGTTGGAGAAGGATTGTGTCTACGC
TATTTTTGCGCGTGATAAGTATTACGAGGTATCCAAGGTGGAAGATGGAGAAACCGAGGAGCACGAGCTCATCGAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25738.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis