Browse Element(s) Details


OsAffx.25750.1.S1_at

Description tigr:9631.m05693
TID=OsAffx.25750.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative inositol polyphosphate 5-phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5795011/11inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein
LOC_Os03g57940Os.21838.1.S1_at11/113+32938457..32945832protein kinase family protein, putative, expressed
LOC_Os03g57950OsAffx.25750.1.S1_at11/113+32949889..32953330inositol-1, 4, 5-trisphosphate 5-Phosphatase-like protein, putative
LOC_Os03g57960Os.8208.1.S1_at11/113+32958969..32961879Cupin family protein, expressed
LOC_Os03g57970Os.18599.1.S1_at11/113+32961950..32962874Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57980OsAffx.25751.1.S1_s_at11/113+32964837..32966364Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g57990Os.55459.1.S1_at10/113+32966943..32968039Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g58000OsAffx.13536.1.S1_at11/113+32970055..32971515expressed protein
LOC_Os03g58010Os.26768.1.S1_at11/113+32973610..32974488acetyltransferase, GNAT family protein, expressed
LOC_Os03g58020NANA3+32975352..32975885acetyltransferase, GNAT family protein, expressed
LOC_Os03g58030OsAffx.21102.1.A1_at1/113+32976407..32976916acetyltransferase, GNAT family protein
LOC_Os03g58040Os.5406.1.S1_at11/113+32976989..32982247Glutamate dehydrogenase, putative, expressed
LOC_Os03g58040OsAffx.21102.2.S1_x_at3/113+32976989..32982247Glutamate dehydrogenase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25750.1.S1_at--807--2751Chr03:32952497..32952521 (25 bp)
AAGACTAGATTTCCTCGGGTTCGTG
LOC_Os03g57950
OsAffx.25750.1.S1_at--685--10591Chr03:32952516..32952540 (25 bp)
TTCGTGGTGCTGGTGACATTAAGTC
LOC_Os03g57950
OsAffx.25750.1.S1_at--190--151Chr03:32952680..32952704 (25 bp)
ATTACCGGATTTCCCTTTCATACTG
LOC_Os03g57950
OsAffx.25750.1.S1_at--225--1991Chr03:32952701..32952725 (25 bp)
ACTGCTCGGCAAAAGCACTCGTTGA
LOC_Os03g57950
OsAffx.25750.1.S1_at--683--5491Chr03:32953001..32953122 (25 bp)
GAACACCAGCTTGGTGCGATCGTAT
LOC_Os03g57950
OsAffx.25750.1.S1_at--478--4631Chr03:32953113..32953137 (25 bp)
GCGATCGTATTCTATGGCATGGTAA
LOC_Os03g57950
OsAffx.25750.1.S1_at--181--10431Chr03:32953156..32953180 (25 bp)
TTATGTTCGTGGAGAGTCGCGCTTC
LOC_Os03g57950
OsAffx.25750.1.S1_at--1001--4311Chr03:32953186..32953210 (25 bp)
CCATAGACCGGTGTACAGCATTTTC
LOC_Os03g57950
OsAffx.25750.1.S1_at--726--6151Chr03:32953217..32953241 (25 bp)
GAGGTTGAAATTATCCGCCAGAGGA
LOC_Os03g57950
OsAffx.25750.1.S1_at--611--271Chr03:32953248..32953272 (25 bp)
ATATGGGCTGTTTCAACTCTAGAGT
LOC_Os03g57950
OsAffx.25750.1.S1_at--178--7731Chr03:32953276..32953300 (25 bp)
GGTGGAAGAGCTTCTGCCATATTCT
LOC_Os03g57950
Target Sequence 
AAGACTAGATTTCCTCGGGTTCGTGGTGCTGGTGACATTAAGTCACCAGAAACCATTCTTGAGCATGATCGTATCATATG
GCTTGGGGATTTGAATTACCGGATTTCCCTTTCATACTGCTCGGCAAAAGCACTCGTTGAAATGCATAACTGGAAGCAAC
TGTTGGAGAAAGATCAACTACGAATAGAACGAAGATGCGGACGCGTTTTCCAGGGGTGGAAAGAAGGACGGATTTATTTT
CCTCCAACATACAAATATTCATTCAACTCAGATCGCTATTCTGGGGAGTGTGTGCATTCAAAGGAAAAGCGAAGAACACC
AGCTTGGTGCGATCGTATTCTATGGCATGGTAATGGACTCATTCAGTTATCTTATGTTCGTGGAGAGTCGCGCTTCTCCG
ACCATAGACCGGTGTACAGCATTTTCATGGCGGAGGTTGAAATTATCCGCCAGAGGAGAAGAAATATGGGCTGTTTCAAC
TCTAGAGTTGAGGTGGAAGAGCTTCTGCCATATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis